Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00073 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACAAGGCCTTGTTGCAATCATCACAAAACTTGGAGCTACCATCAAAGATTACTACTAATAATATGAACATGAAGAAACAACAACAGCAGCAGCAGCAGCAACCTATGTTAGAGCCTCTGAGGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTCCGCAATGTTCCTGTTGGTGGCGGAAGGAAGAATAAGAGACCAACCAAGAAATCATCAACACACTCTTCTAATACCACCACCACCACCACCACCACCACTGTTACCACCTCAAATGGTGGTGGTGGAAAAGTGGAAGTTCAACCTCCTCCTCCTCCTCCTCTTTACCAATCTATGATTCGTCCATCACCTTTGCTACCAGAAGTTAAGGACTTTGGTGGTAGTGGAATGTTTCTTAGTTCATCATCATCATCAGCTGTGAATCTTCCACAAAGTCAAGGACTAATCTTTCCCTTCTCAACAACATCAAGCTCTTTTGATGCAAACCCATGTTCAGTTTCAGCCTCTAATATTTATAGCTATGGTGGAGAAGAGTTTAAGGCAATGGAGGAGGCAACCATCAATGATGGAGCATATTATGTGTTCTTTCTTCACCTGTAA 723 0.426 MGLSSKQVSSTGLDWNKALLQSSQNLELPSKITTNNMNMKKQQQQQQQQPMLEPLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPTKKSSTHSSNTTTTTTTTTVTTSNGGGGKVEVQPPPPPPLYQSMIRPSPLLPEVKDFGGSGMFLSSSSSSAVNLPQSQGLIFPFSTTSSSFDANPCSVSASNIYSYGGEEFKAMEEATINDGAYYVFFLHL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00073 240 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Stsc60420g00073 240 Pfam Dof domain, zinc finger 55 107 IPR003851 GO:0003677|GO:0006355
Stsc60420g00073 240 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 154 IPR045174 GO:0003700|GO:0006355
Stsc60420g00073 240 MobiDBLite consensus disorder prediction 93 145 - -
Stsc60420g00073 240 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Stsc60420g00073 240 MobiDBLite consensus disorder prediction 113 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00073 Stsc-Chr60420 347372 348942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00073 24 123 C2C2-Dof Transcription Factor Family AT1G51700 52.941 1.64e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60420g00073 zf-Dof 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00073 - - gmx:100818111 220.32