Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00067 ATGGCCATTATTAAGAGTTGTGGCTGCTTTGGAACCTCAACAACAAAGAAGAAAAAAAGTACTTATTCTCATAGTCCCAATGAAATTGATGGCTATCCATTAGGCAATGTTAGGCAATTCTCTGATAAGGAACTGAGATTGGCAACTGATAATTATGATTCAAGCAGTAAGATAGGAAGAGGAGGCTTTGGAACTGTTTTCCAGGGAACCTTAAAAGATGGAAGACAGATAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAAGGAGTTCGCGAATTCTTGACTGAAATCAAGACATTATCAAATGTTAGACATCCAAACCTTGTTGAGTTGATTGGATTCAGCATTCAAGGAGCTAGCCGCACATTAGTCTATGAGTATGTGGAAAATGGCAACCTTGATAGTGCATTACTTGGCACAAGGACTAAGAGAATTACCCTAGATTGGAGAAAAAGATCTGCTATTTGCATAGGTACTGCTAAGGGACTTGCATTTCTTCATGAGGAAATTGTGCCACACATTGTACATAGAGATATCAAAGCTAGTAATGTACTACTTGACAAAGACTATAATCCAAAAATTGGTGATTTTGGATTGGCGAAATTATTCCCGGACGACATTACTCACATCAGCACAAAAATCGCCGGAACAACGGGTTACTTAGCACCAGAATATGCATTAGGTGGACAGTTAACTATGAAGGCTGATATATACAGTTTTGGGGTTCTTATGCTTGAAATCATTAGCGGCAGACGCAGCTCGAGGAGTAACTGTGGAGATTCCAACAAACTCCTTTTGGAATGGGCATGGCAACTTCATGAAGAGGGTAAGCTTTTGGATCTTGTAGATCCAGAGATGGAAGAGTTTCCAGAGACAGAGGTGATGAAGTACATGAAGGTTGCATTTTTCTGCACACAGTCAGCAGCAAGTAGGAGGCCATTGATGACACAAGTGGTTGACATGCTCTCAAAGGAAATCCAGCTCAATGAGAGCCAATTACAACCACCAGGATTCTTCATGGATTCAAATGGTGAATCCTCTCGGAACAAGTCAACTTCTAACTCTGCACCTCCTAATGATAGCTCAAGTCACAGTATTACTCAGGTGGCCCCTCGATGA 1119 0.412 MAIIKSCGCFGTSTTKKKKSTYSHSPNEIDGYPLGNVRQFSDKELRLATDNYDSSSKIGRGGFGTVFQGTLKDGRQIAVKTLSVGSKQGVREFLTEIKTLSNVRHPNLVELIGFSIQGASRTLVYEYVENGNLDSALLGTRTKRITLDWRKRSAICIGTAKGLAFLHEEIVPHIVHRDIKASNVLLDKDYNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADIYSFGVLMLEIISGRRSSRSNCGDSNKLLLEWAWQLHEEGKLLDLVDPEMEEFPETEVMKYMKVAFFCTQSAASRRPLMTQVVDMLSKEIQLNESQLQPPGFFMDSNGESSRNKSTSNSAPPNDSSSHSITQVAPR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00067 372 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Stsc60420g00067 372 FunFam Putative LRR receptor-like serine/threonine-protein kinase 128 334 - -
Stsc60420g00067 372 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00067 372 Pfam Protein tyrosine and serine/threonine kinase 55 322 IPR001245 GO:0004672|GO:0006468
Stsc60420g00067 372 PIRSF ILK 3 333 - -
Stsc60420g00067 372 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 32 127 - -
Stsc60420g00067 372 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Stsc60420g00067 372 MobiDBLite consensus disorder prediction 333 372 - -
Stsc60420g00067 372 CDD STKc_IRAK 58 324 - -
Stsc60420g00067 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Stsc60420g00067 372 SUPERFAMILY Protein kinase-like (PK-like) 36 353 IPR011009 -
Stsc60420g00067 372 SMART serkin_6 52 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00067 372 Gene3D Phosphorylase Kinase; domain 1 23 127 - -
Stsc60420g00067 372 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00067 Stsc-Chr60420 316080 318756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00067 40 371 Receptor kinase-like Gene Family AT1G56120 48.494 2.15e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60420g00067 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00067 - - gmx:100788143 553.903