Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00066 ATGGCCATTATTAAGAGTTGTGGCTGCTTTGGAACCTCAACAACAAAGAAGAAAAAAAGTACTTATTCTCATAGTCCCAATGAAATTGATGGCTATCCATTAGGCAATGTTAGGCAATTCTCTGATAAGGAACTGAGATTGGCAACTGATAATTATGATTCAAGCAGTAAGATAGGAAGAGGAGGCTTTGGAACTGTTTTCCAGGGAACCTTAAAAGATGGAAGACAGATAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAAGGAGTTCGCGAATTCTTGACTGAAATCAAGACATTATCAAATGTTAGACATCCAAACCTTGTTGAGTTGATTGGATTCAGCATTCAAGGAGCTAGCCGCACATTAGTCTATGAGTATGTGGAAAATGGCAACCTTGATAGTGCATTACTTGGCACAAGGACTAAGAGAATTACCCTAGATTGGAGAAAAAGATCTGCTATTTGCATAGGTACTGCTAAGGGACTTGCATTTCTTCATGAGGAAATTGTGCCACACATTGTACATAGAGATATCAAAGCTAGTAATGTACTACTTGACAAAGACTATAATCCAAAAATTGGTGATTTTGGATTGGCGAAATTATTCCCGGACGACATTACTCACATCAGCACAAAAATCGCCGGAACAACGGGTTACTTAGCACCAGAATATGCATTAGGTGGACAGTTAACTATGAAGGCTGATATATACAGTTTTGGGGTTCTTATGCTTGAAATCATTAGCGGCAGACGCAGCTCGAGGAGTAACTGTGGAGATTCCAACAAACTCCTTTTGGAATGGGTATGTGAGTAA 816 0.3958 MAIIKSCGCFGTSTTKKKKSTYSHSPNEIDGYPLGNVRQFSDKELRLATDNYDSSSKIGRGGFGTVFQGTLKDGRQIAVKTLSVGSKQGVREFLTEIKTLSNVRHPNLVELIGFSIQGASRTLVYEYVENGNLDSALLGTRTKRITLDWRKRSAICIGTAKGLAFLHEEIVPHIVHRDIKASNVLLDKDYNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADIYSFGVLMLEIISGRRSSRSNCGDSNKLLLEWVCE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00066 271 ProSiteProfiles Protein kinase domain profile. 52 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00066 271 Gene3D Phosphorylase Kinase; domain 1 23 127 - -
Stsc60420g00066 271 SUPERFAMILY Protein kinase-like (PK-like) 23 254 IPR011009 -
Stsc60420g00066 271 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 270 - -
Stsc60420g00066 271 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Stsc60420g00066 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Stsc60420g00066 271 CDD STKc_IRAK 58 269 - -
Stsc60420g00066 271 SMART serkin_6 52 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00066 271 Pfam Protein kinase domain 52 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00066 271 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 32 127 - -
Stsc60420g00066 271 Gene3D Transferase(Phosphotransferase) domain 1 128 271 - -
Stsc60420g00066 271 FunFam Lectin-domain containing receptor kinase A4.3 128 271 - -
Stsc60420g00066 271 PIRSF ILK 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00066 Stsc-Chr60420 316080 318796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00066 37 269 Receptor kinase-like Gene Family AT1G53420 56.223 9.26e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60420g00066 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00066 - - gmx:100809588 427.557