Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00062 ATGAGGACGCTGAAAGAGTTTTTCTGGAGGCACTACTACTCTCTTTGGTGGTCACCCTCACCGTCACTATCGCCACGGCTACACATGGTTTTCAACTCTAAATCTCAAACTCAAACTGAATCGGGATCCAGAAAGAGGCACCGCATACTACTGAATTCTGACGACGTCGCCACAAAACGAAACAAGATCAACCAAGAGGACAAAGGAGAAGAGTCTTCATCGTTGATTTCGTCGTTCGTGTGCGAAATCTGCGTTGAGACGAAAACCGAATCCGAATCTTTTTCAATAAGAGGATGTAACCACTCATACTGTAGGGATTGCGTGGTGAAGTACATCGGTTCAAAGCTCGACGAGAACGTGATTAATATCCGGTGTCCGGTTCCCCGGTGCAGTGGTCTGTTGGAAAGCGAGGATTGCCGCGATGTTCTTCCAAAGTTGGTATTTGATCGGTGGGAGAATTCATTGTGCAACGCTGCTGTTACGGAGAACGAGAGCGAGAGATTCATGTATTGCCCCTTTAGGGATTGCTCTGCCCTTATAATCGTGGACGATTCTCCAACGTTACAGAGGAAATCAGAGTGCCCTAACTGTAAGAGGGAGATCTGCGCGGCGTGCGTGGCAGTTTGGCATGATGGGATTACGTGCGAGGAATTTAGGAGGATTGATGATGAAGATAGAGTTGCGATGGAGTTAGCAGGGAGGAAGGTGTGGAGGAGGTGCCCTAACTGCAAGTTTTATGTTGAGAAGGAAGCTTTTACATGCAGTAGAGTACGTTGCAGGTGTGGATATTTGTTCTGTTACGGCTGTGGAAGTGGTGGCGGTTCCCCCTGTGTCTGTCTCCTTGAATTGACCACCACTTTCACCGACCGTCTTTTTAGATGGTTTCTATTGGTTTAG 897 0.4771 MRTLKEFFWRHYYSLWWSPSPSLSPRLHMVFNSKSQTQTESGSRKRHRILLNSDDVATKRNKINQEDKGEESSSLISSFVCEICVETKTESESFSIRGCNHSYCRDCVVKYIGSKLDENVINIRCPVPRCSGLLESEDCRDVLPKLVFDRWENSLCNAAVTENESERFMYCPFRDCSALIIVDDSPTLQRKSECPNCKREICAACVAVWHDGITCEEFRRIDDEDRVAMELAGRKVWRRCPNCKFYVEKEAFTCSRVRCRCGYLFCYGCGSGGGSPCVCLLELTTTFTDRLFRWFLLV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00062 298 SUPERFAMILY RING/U-box 78 158 - -
Stsc60420g00062 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Stsc60420g00062 298 Pfam IBR domain, a half RING-finger domain 150 215 IPR002867 GO:0008270
Stsc60420g00062 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 272 IPR031127 GO:0004842|GO:0016567
Stsc60420g00062 298 ProSiteProfiles TRIAD supradomain profile. 77 289 IPR044066 -
Stsc60420g00062 298 SUPERFAMILY RING/U-box 164 219 - -
Stsc60420g00062 298 Gene3D - 211 276 - -
Stsc60420g00062 298 Pfam Zinc finger, C3HC4 type (RING finger) 81 126 IPR018957 GO:0046872
Stsc60420g00062 298 FunFam RBR-type E3 ubiquitin transferase 76 162 - -
Stsc60420g00062 298 SUPERFAMILY RING/U-box 227 277 - -
Stsc60420g00062 298 ProSiteProfiles Zinc finger RING-type profile. 81 129 IPR001841 -
Stsc60420g00062 298 SMART ibrneu5 219 279 IPR002867 GO:0008270
Stsc60420g00062 298 SMART ibrneu5 149 215 IPR002867 GO:0008270
Stsc60420g00062 298 ProSitePatterns Zinc finger RING-type signature. 99 108 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00062 Stsc-Chr60420 293684 294927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00062 81 271 C3H Transcription Factor Family AT2G19610 24.402 2.83e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00062 K11975 - qsa:O6P43_021976 222.631