Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60420g00061 | ATGTCTGACACCGAAAATCGCGCTTCCTTTCGTGGTCGTTCATCGCCCGATAAGCCAATTTCTCGTCGACCTGCTTATGAAAATTCACGGATGAGAAGGCAAGATGATGAGAGGAAAACTTTTCATGACCGCCATCACAGAGACCACAAGGGTGGAAGATTTACTGGGAGAGGTAAATATGACAGTTACAGTCGGCACAAGAGCAGTGATTATGATAGACATAATGACCGTGATTTCCATGGAGAAACAAAGCACAAACATGGAGCACATTCAAAGAGATCAAGGAGGGAATCGAGATCAAGATCACGGTCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCACTGGTTTTGACATGGCACCACCTGCTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATATGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCGCAGATGGGAGCACTTTCTGTAATGCACATTCAACCTATGACGCAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGCTTCCTCCGTTAACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGACTACCATTGGGGGGAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCTGTTGGACTTGCTGTTGGTTCTGTTGGTGGAACTGAGGGGCTTGACCGCATTTTTGTCGGCGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAATTACTAGAATCTTTTGGTACTCTCCAAGCTTTTGATTTGGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTGAATGGCCTCAAAATGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGCCATTCTAAAACCGAACAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTTGGCGGGTCAAATATTCCCGGGGCAGAAAGAGTGCCAACTACAATTGATGAAAGTGCTACTAAAGTGTTATGTTTGACAAAGGCCGTTACGACTGATCAGTTGTTGGATGACGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCTGCAAATTTGGAACTTTGGTGAATGTTGTTATTCCCCGTCCAAATCCCGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCCGGTTGTTTCGCCGCAAAAAATGCGCTGCATGGTAGGAAATTCGGTGGCAATGTTGTGACTGCTGTTTATTATTCTGAAGAGAAATATCACAGTATGGACTATGGAGTATGA | 1578 | 0.4474 | MSDTENRASFRGRSSPDKPISRRPAYENSRMRRQDDERKTFHDRHHRDHKGGRFTGRGKYDSYSRHKSSDYDRHNDRDFHGETKHKHGAHSKRSRRESRSRSRSRSPSRSECKRTTGFDMAPPAADVTPAVSGQILGTAHMIQGTSQNLSPFGISQMGALSVMHIQPMTQQATRHARRVYVGGLPPLTNEQTIAAFFSQVMTTIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAVGSVGGTEGLDRIFVGGLSYCFTEEQIRQLLESFGTLQAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKIALEVGGSNIPGAERVPTTIDESATKVLCLTKAVTTDQLLDDEEYEEILEDMRDECCKFGTLVNVVIPRPNPGGELPPGIGKVFLEYSDNAGCFAAKNALHGRKFGGNVVTAVYYSEEKYHSMDYGV | 525 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60420g00061 | 525 | SUPERFAMILY | RNA-binding domain, RBD | 298 | 517 | IPR035979 | GO:0003676 | |
Stsc60420g00061 | 525 | MobiDBLite | consensus disorder prediction | 54 | 85 | - | - | |
Stsc60420g00061 | 525 | NCBIfam | U2 snRNP auxilliary factor, large subunit, splicing factor | 27 | 523 | IPR006529 | GO:0003723|GO:0005634|GO:0006397 | |
Stsc60420g00061 | 525 | Gene3D | - | 291 | 393 | IPR012677 | - | |
Stsc60420g00061 | 525 | SMART | rrm1_1 | 425 | 511 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | SMART | rrm1_1 | 178 | 256 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | SMART | rrm1_1 | 298 | 371 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | SUPERFAMILY | RNA-binding domain, RBD | 97 | 257 | IPR035979 | GO:0003676 | |
Stsc60420g00061 | 525 | CDD | RRM2_U2AF65 | 297 | 373 | - | - | |
Stsc60420g00061 | 525 | MobiDBLite | consensus disorder prediction | 86 | 100 | - | - | |
Stsc60420g00061 | 525 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 299 | 368 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | CDD | RRM1_U2AF65 | 176 | 258 | - | - | |
Stsc60420g00061 | 525 | CDD | RRM3_U2AF65 | 423 | 511 | - | - | |
Stsc60420g00061 | 525 | PANTHER | RNA-BINDING PROTEIN | 6 | 523 | - | - | |
Stsc60420g00061 | 525 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 177 | 260 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Stsc60420g00061 | 525 | Gene3D | - | 419 | 523 | IPR012677 | - | |
Stsc60420g00061 | 525 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 297 | 375 | IPR000504 | GO:0003723 | |
Stsc60420g00061 | 525 | FunFam | U2 snRNP auxiliary factor large subunit | 172 | 273 | - | - | |
Stsc60420g00061 | 525 | MobiDBLite | consensus disorder prediction | 1 | 126 | - | - | |
Stsc60420g00061 | 525 | Gene3D | - | 172 | 273 | IPR012677 | - | |
Stsc60420g00061 | 525 | FunFam | U2 snRNP auxiliary factor large subunit | 420 | 524 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60420g00061 | Stsc-Chr60420 | 285983 | 291970 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60420g00061 | 299 | 505 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.188 | 3.12e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60420g00061 | K12837 | - | qsa:O6P43_031823 | 681.789 |