Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00061 ATGTCTGACACCGAAAATCGCGCTTCCTTTCGTGGTCGTTCATCGCCCGATAAGCCAATTTCTCGTCGACCTGCTTATGAAAATTCACGGATGAGAAGGCAAGATGATGAGAGGAAAACTTTTCATGACCGCCATCACAGAGACCACAAGGGTGGAAGATTTACTGGGAGAGGTAAATATGACAGTTACAGTCGGCACAAGAGCAGTGATTATGATAGACATAATGACCGTGATTTCCATGGAGAAACAAAGCACAAACATGGAGCACATTCAAAGAGATCAAGGAGGGAATCGAGATCAAGATCACGGTCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCACTGGTTTTGACATGGCACCACCTGCTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATATGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCGCAGATGGGAGCACTTTCTGTAATGCACATTCAACCTATGACGCAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGCTTCCTCCGTTAACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGACTACCATTGGGGGGAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCTGTTGGACTTGCTGTTGGTTCTGTTGGTGGAACTGAGGGGCTTGACCGCATTTTTGTCGGCGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAATTACTAGAATCTTTTGGTACTCTCCAAGCTTTTGATTTGGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTGAATGGCCTCAAAATGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGCCATTCTAAAACCGAACAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTTGGCGGGTCAAATATTCCCGGGGCAGAAAGAGTGCCAACTACAATTGATGAAAGTGCTACTAAAGTGTTATGTTTGACAAAGGCCGTTACGACTGATCAGTTGTTGGATGACGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCTGCAAATTTGGAACTTTGGTGAATGTTGTTATTCCCCGTCCAAATCCCGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCCGGTTGTTTCGCCGCAAAAAATGCGCTGCATGGTAGGAAATTCGGTGGCAATGTTGTGACTGCTGTTTATTATTCTGAAGAGAAATATCACAGTATGGACTATGGAGTATGA 1578 0.4474 MSDTENRASFRGRSSPDKPISRRPAYENSRMRRQDDERKTFHDRHHRDHKGGRFTGRGKYDSYSRHKSSDYDRHNDRDFHGETKHKHGAHSKRSRRESRSRSRSRSPSRSECKRTTGFDMAPPAADVTPAVSGQILGTAHMIQGTSQNLSPFGISQMGALSVMHIQPMTQQATRHARRVYVGGLPPLTNEQTIAAFFSQVMTTIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAVGSVGGTEGLDRIFVGGLSYCFTEEQIRQLLESFGTLQAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKIALEVGGSNIPGAERVPTTIDESATKVLCLTKAVTTDQLLDDEEYEEILEDMRDECCKFGTLVNVVIPRPNPGGELPPGIGKVFLEYSDNAGCFAAKNALHGRKFGGNVVTAVYYSEEKYHSMDYGV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00061 525 SUPERFAMILY RNA-binding domain, RBD 298 517 IPR035979 GO:0003676
Stsc60420g00061 525 MobiDBLite consensus disorder prediction 54 85 - -
Stsc60420g00061 525 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 523 IPR006529 GO:0003723|GO:0005634|GO:0006397
Stsc60420g00061 525 Gene3D - 291 393 IPR012677 -
Stsc60420g00061 525 SMART rrm1_1 425 511 IPR000504 GO:0003723
Stsc60420g00061 525 SMART rrm1_1 178 256 IPR000504 GO:0003723
Stsc60420g00061 525 SMART rrm1_1 298 371 IPR000504 GO:0003723
Stsc60420g00061 525 SUPERFAMILY RNA-binding domain, RBD 97 257 IPR035979 GO:0003676
Stsc60420g00061 525 CDD RRM2_U2AF65 297 373 - -
Stsc60420g00061 525 MobiDBLite consensus disorder prediction 86 100 - -
Stsc60420g00061 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 368 IPR000504 GO:0003723
Stsc60420g00061 525 CDD RRM1_U2AF65 176 258 - -
Stsc60420g00061 525 CDD RRM3_U2AF65 423 511 - -
Stsc60420g00061 525 PANTHER RNA-BINDING PROTEIN 6 523 - -
Stsc60420g00061 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 260 IPR000504 GO:0003723
Stsc60420g00061 525 MobiDBLite consensus disorder prediction 1 43 - -
Stsc60420g00061 525 Gene3D - 419 523 IPR012677 -
Stsc60420g00061 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Stsc60420g00061 525 FunFam U2 snRNP auxiliary factor large subunit 172 273 - -
Stsc60420g00061 525 MobiDBLite consensus disorder prediction 1 126 - -
Stsc60420g00061 525 Gene3D - 172 273 IPR012677 -
Stsc60420g00061 525 FunFam U2 snRNP auxiliary factor large subunit 420 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00061 Stsc-Chr60420 285983 291970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00061 299 505 Eukaryotic Initiation Factors Gene Family AT2G23350 23.188 3.12e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00061 K12837 - qsa:O6P43_031823 681.789