Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00057 ATGTACATAGGAACTTCCATGAGAAGGTCTTTCAAGGATTCCTTGAAAGTCCTTGAAGCTGATATTCAGCACGCCAATACCCTGGCATCAGAGTTTCCAAGGGAGTGTGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTTTTCTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCACTTGGCTTGTTAAGAATCCTAATTTACAAGGTATATGTTGATGGAACAACTACCATGTCTACCCATGAGAGGAAAGCTAGCATTAGAGAATTCTATGCGGTAATTTATCCGTCTTTGTTACAACTTCAGAAAGGGGTTACAGATTCGGAGGATAAGAAACAGAAGGCTGTTTGTATGGAGAGGTATAGCAAAAGAGACAATGAGGATCATGGACATAATTCTGATATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAGTGAATAGTAAGATTGTGTTACCTAACTGCATCCATGCAATGTGCCTGAAATGTTACCGCGAATGGAGAACAAGATCCCAATCGTGCCCCTTTTGTCGCGATAGTCTGAAGAGAGTGAACTCGTGCGATCTCTGGGTGTTTACCGATAGCAGGGATGTAGTGGACATGGAAACAGTGACAAGGGAGGATCTAAAGAGGCTTTTCATGTACATTGATAAGTTGCCCTTGATCATTCCAGACTCTCTTTTTGATCCCTATGACTCTCAACTGAGATGA 747 0.423 MYIGTSMRRSFKDSLKVLEADIQHANTLASEFPRECDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDSEDKKQKAVCMERYSKRDNEDHGHNSDIDIEREEECGICMEVNSKIVLPNCIHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMETVTREDLKRLFMYIDKLPLIIPDSLFDPYDSQLR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00057 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Stsc60420g00057 248 SMART ring_2 152 189 IPR001841 -
Stsc60420g00057 248 FunFam RING/U-box superfamily protein 130 199 - -
Stsc60420g00057 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Stsc60420g00057 248 PANTHER RING FINGER PROTEIN 41, 151 9 244 - -
Stsc60420g00057 248 SUPERFAMILY RING/U-box 142 195 - -
Stsc60420g00057 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Stsc60420g00057 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 201 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00057 Stsc-Chr60420 269237 271673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00057 151 230 C3H Transcription Factor Family AT2G20030 33.333 8.04e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00057 K25840 - pvy:116126787 451.825