Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00048 ATGGCAATAGATCACTACATCTCCCAGGAATGGAAAAGTATCCCAAATTCGGCTACCGAAACAGAAAACTACAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGCGAACCGGTAGTGACTTTATGTGGCCATCTATACTGCTGGCCCTGCATCTACAAGTGGCTGCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGGTATATCCCACACCACAATGGTTCCTCTCTACGGCCGCGGTCAGGCTCCGTCCGATAGGAAGGCATTGTCTCGTGATCTTCTCGTGCCGCCAAGGCCACCTGCTTCCAGTGCTCAATCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTTCCATATCGAAATCCATATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTATGCAGCTGCTCAATGGTGCTACCATGAATCTAGGATCCCAACAGTACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATTCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGGCAAGTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGTTTGAACAGAATCTCAATTTTTCTCTTTTGCTGCTTCCTTCTGTGTCTTATTGTCTTCTGA 705 0.461 MAIDHYISQEWKSIPNSATETENYNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKAGISHTTMVPLYGRGQAPSDRKALSRDLLVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATMQLLNGATMNLGSQQYPSLVGMFGEMFYSRVFGNSENLYAYPNSYQPMASNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00048 234 MobiDBLite consensus disorder prediction 114 133 - -
Stsc60420g00048 234 MobiDBLite consensus disorder prediction 104 133 - -
Stsc60420g00048 234 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Stsc60420g00048 234 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Stsc60420g00048 234 CDD RING-HC_AtRMA-like 28 78 - -
Stsc60420g00048 234 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Stsc60420g00048 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Stsc60420g00048 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc60420g00048 234 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Stsc60420g00048 234 SUPERFAMILY RING/U-box 25 89 - -
Stsc60420g00048 234 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00048 Stsc-Chr60420 239231 241252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00048 6 220 C3H Transcription Factor Family AT4G27470 39.474 2.06e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00048 K10666 - gmx:100816864 320.087