Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00042 ATGATTAAACACATGAACTCACTGCTTCTACCACCATTTCTTCTATCAGTAGTTGTCCTTTTCAGCTCAATATCTGCCACTGATTTTGTCTTCAATGGCTTCAACTCCTCTGATTTGTTCCTCTATGGGAATGCAACCATTGACTCAAGAATCCTAACCCTCACACATCACCAAACTTTCTCAGTTGGTCGTGCACTTTACCATCACAAGATTCAAACCAAGAACTCAAACTCTTCTTCCTATGTCTACCCTTTCTCCACTTCCTTCATATTCTCCATAGCACCTTTTAAGAACACTCTTCCTGGCCATGGATTTGTCTTCATCTTCACACCAGTCACAGGCATATTCCATGGTACAAGCACTGCTGCTCAGAATCTGGGGCTCTTCAACTTCACCAACAATGGAAACTCAAGCAACCATGTGTTTGGTGTTGAGTTTGATGTGTTTAAGAATCAGGAGTTTAATGACATAAGCGACAACCATGTTGGGATTGACATAAACTCTCTCACCTCTCTTGCATCTCATGATGCAGGGTATTTTCCAGATGAAGATCATGATTCCTTCAAGGATTTGAAGCTCAACAATGGAGAGAATTACCAGGTTTGGATTGACTATGATGATTCTCTGCTCAATGTTACCATGGCAAAGGTTGGGCAATTAGTTGAGAGTCACAAGATTCTTGCTTGGAGTTTTAGCAACACTAATTTCTCATTAAGTGAAGAGATTATTACTACTGGTTTACCCTCTTTTGTTCTTCCAAAGGATTCAATTTTCAAGTCAAAGGGGTTTGTTGCAGGGTTCACAGTAGGTATCTTCTTTGTTGTTTGTGTCTTTGTTTTGCTTGCAATGTTTCTGATTCGGTTAAAGATAAGGCTTGAAAGGAAGAGAAAGGAAATGGAAGATTGGGAGTTAGAGTATTGGCCACACAGAATGACATATGAAGAAATTGAGGCAGCAACAAAGGGATTTGATGAGGAAAATGTGATTGGAGTTGGTGGCAATGGTAAGGTCTACAAGGGTGTTCTAAGAGGCGGCGGCGTGGAGGTGGCCGTGAAGCGAATATCACAAGAAAACAACGGCGTGCGAGAGTTTCTAGCAGAAATTTCAAGCCTTGGAAGATTGAAGCATAAGAACTTGGTTGGTTTGAGAGGATGGTGCAAGAAAGACATGGTAAATTTCTTGTTAGTTTATGAGTACATGGAGAATGGGAGTTTGGATAAGAGAGTGTTCTGTGATGAGAGCAAGATGCTGAACTGTGAAGAGAGAATAAGAATCATCAGAGATGTGGCCTTTGCAGTGTTGTATCTGCATGAAGGTTGGGAAGAAAAGGTTCTGCATAGGGACATCAAAGCCAGCAATGTGTTGCTTGATAAGGATATGAATGCAAAACTTGGAGACTTTGGATTAGCAAGAATCCATAGCCATGGACAAGTTGCTAGCACAACAAAGTTTGTTGGAACAGTTGGTTACATGGCTCCGGAAGTGATCAAAACCGGGCAAGCCTCGACTCGCACCGATGTGTACATGTTTGGAATCATGATTTTAGAGGTCATGTGTGGAAGAAGGCCCATGGAAGAAGGTAAGCCACCTCTAGTGGAGTTTGTGTGGGAACTAATGGTAAAAGGGGAACTCATGAATGCACTTGATGAGAGGTTAAGGGCTAAAGGAGAGTTCAATGTGCAAGAAGTTGAGAAGGTTCTTCAGTTGGGATTGTTGTGTGCTTATCCTGAACCAAAATCAAGACCAAAAATGAGACTAGTTGTGAGTGTTTTAGAAGGGAAGAACAATGAAGGAGGTGAAGAATCAGAGAATGAGAATATGGAAACTAGTTTGCTTCTGAGGTTGAAATCTGGGGATATTTTGTCTGAGTATTCTAAGTATTTTAACTATTCAACACATCCAACATTTGAAGATATTCGCCAGTCTCATACTTCATCAAAGTCTCTCACTTGGTCCAAATCTTTAGTTGTTGGTAGATAG 1980 0.4101 MIKHMNSLLLPPFLLSVVVLFSSISATDFVFNGFNSSDLFLYGNATIDSRILTLTHHQTFSVGRALYHHKIQTKNSNSSSYVYPFSTSFIFSIAPFKNTLPGHGFVFIFTPVTGIFHGTSTAAQNLGLFNFTNNGNSSNHVFGVEFDVFKNQEFNDISDNHVGIDINSLTSLASHDAGYFPDEDHDSFKDLKLNNGENYQVWIDYDDSLLNVTMAKVGQLVESHKILAWSFSNTNFSLSEEIITTGLPSFVLPKDSIFKSKGFVAGFTVGIFFVVCVFVLLAMFLIRLKIRLERKRKEMEDWELEYWPHRMTYEEIEAATKGFDEENVIGVGGNGKVYKGVLRGGGVEVAVKRISQENNGVREFLAEISSLGRLKHKNLVGLRGWCKKDMVNFLLVYEYMENGSLDKRVFCDESKMLNCEERIRIIRDVAFAVLYLHEGWEEKVLHRDIKASNVLLDKDMNAKLGDFGLARIHSHGQVASTTKFVGTVGYMAPEVIKTGQASTRTDVYMFGIMILEVMCGRRPMEEGKPPLVEFVWELMVKGELMNALDERLRAKGEFNVQEVEKVLQLGLLCAYPEPKSRPKMRLVVSVLEGKNNEGGEESENENMETSLLLRLKSGDILSEYSKYFNYSTHPTFEDIRQSHTSSKSLTWSKSLVVGR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00042 659 Gene3D Transferase(Phosphotransferase) domain 1 400 617 - -
Stsc60420g00042 659 Coils Coil 285 305 - -
Stsc60420g00042 659 SMART serkin_6 323 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00042 659 ProSiteProfiles Protein kinase domain profile. 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00042 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Stsc60420g00042 659 Gene3D - 24 219 - -
Stsc60420g00042 659 FunFam L-type lectin-domain containing receptor kinase S.4 400 605 - -
Stsc60420g00042 659 CDD STKc_IRAK 329 593 - -
Stsc60420g00042 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 234 IPR013320 -
Stsc60420g00042 659 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Stsc60420g00042 659 Gene3D Phosphorylase Kinase; domain 1 287 399 - -
Stsc60420g00042 659 Pfam Legume lectin domain 27 220 IPR001220 GO:0030246
Stsc60420g00042 659 Pfam Protein kinase domain 324 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60420g00042 659 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 285 399 - -
Stsc60420g00042 659 SUPERFAMILY Protein kinase-like (PK-like) 298 592 IPR011009 -
Stsc60420g00042 659 CDD lectin_legume_LecRK_Arcelin_ConA 27 234 IPR001220 GO:0030246
Stsc60420g00042 659 PANTHER - 43 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00042 Stsc-Chr60420 179323 181543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00042 24 539 Receptor kinase-like Gene Family AT4G04960 62.568 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc60420g00042 Pkinase 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00042 - - gmx:100804391 955.281