Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00037 ATGGAGATCAACAACAAGAAGCTTGCTGCTTCTAATTCCTCCACCAAAACTGAGAGAAAATTGATTGAGAGAAATAGAAGAAACCAAATGAAGGCACTCTACTGCAAGCTCAATTCTCTCCTCCCTCCTCAAACCTCAAGGGAGGGGATTTGTTCATCACTGCCGGATCAGCTAGAGGAAGCCACGAACTACATAAAGAAGTTACAGGTGAAGGTGGAGAAAATGAAGGAAAAGAAGAACACGCTACTTGGAAGTAGGGTTCATCAAAGGCCAAATACTATTAGTAGTGGTCTAATTAGATCTCCAGAAATTGAGATCCAGCAAATGGGATCCACATTAATGGTTGTTCTCATAACTGGATTGGATTGTCATTTCATGTTCAATGATGCCATTCGTATTCTTCACGAAGAAGGTGCAGATGTTGTTAGCGCCACTTACAAGGTTGTTCATCAACATGCTGTTTTCCATACAATGCACTGCCAGGTAAATGAGTATGCGAATGGAGGCGGGGCAAGGATATCAGAGAGACTGAAGAAGTTTGTGAATGATTGTAGCTATTGTCCCTTTTAG 570 0.4175 MEINNKKLAASNSSTKTERKLIERNRRNQMKALYCKLNSLLPPQTSREGICSSLPDQLEEATNYIKKLQVKVEKMKEKKNTLLGSRVHQRPNTISSGLIRSPEIEIQQMGSTLMVVLITGLDCHFMFNDAIRILHEEGADVVSATYKVVHQHAVFHTMHCQVNEYANGGGARISERLKKFVNDCSYCPF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00037 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 86 IPR036638 GO:0046983
Stsc60420g00037 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 68 IPR011598 GO:0046983
Stsc60420g00037 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 181 - -
Stsc60420g00037 189 Coils Coil 58 85 - -
Stsc60420g00037 189 Gene3D - 13 94 IPR036638 GO:0046983
Stsc60420g00037 189 Pfam Helix-loop-helix DNA-binding domain 16 69 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00037 Stsc-Chr60420 157753 158616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00037 11 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 44.809 2.90e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60420g00037 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00037 - - gmx:100814407 212.231