Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60420g00037 | ATGGAGATCAACAACAAGAAGCTTGCTGCTTCTAATTCCTCCACCAAAACTGAGAGAAAATTGATTGAGAGAAATAGAAGAAACCAAATGAAGGCACTCTACTGCAAGCTCAATTCTCTCCTCCCTCCTCAAACCTCAAGGGAGGGGATTTGTTCATCACTGCCGGATCAGCTAGAGGAAGCCACGAACTACATAAAGAAGTTACAGGTGAAGGTGGAGAAAATGAAGGAAAAGAAGAACACGCTACTTGGAAGTAGGGTTCATCAAAGGCCAAATACTATTAGTAGTGGTCTAATTAGATCTCCAGAAATTGAGATCCAGCAAATGGGATCCACATTAATGGTTGTTCTCATAACTGGATTGGATTGTCATTTCATGTTCAATGATGCCATTCGTATTCTTCACGAAGAAGGTGCAGATGTTGTTAGCGCCACTTACAAGGTTGTTCATCAACATGCTGTTTTCCATACAATGCACTGCCAGGTAAATGAGTATGCGAATGGAGGCGGGGCAAGGATATCAGAGAGACTGAAGAAGTTTGTGAATGATTGTAGCTATTGTCCCTTTTAG | 570 | 0.4175 | MEINNKKLAASNSSTKTERKLIERNRRNQMKALYCKLNSLLPPQTSREGICSSLPDQLEEATNYIKKLQVKVEKMKEKKNTLLGSRVHQRPNTISSGLIRSPEIEIQQMGSTLMVVLITGLDCHFMFNDAIRILHEEGADVVSATYKVVHQHAVFHTMHCQVNEYANGGGARISERLKKFVNDCSYCPF | 189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60420g00037 | 189 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 13 | 86 | IPR036638 | GO:0046983 | |
Stsc60420g00037 | 189 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 14 | 68 | IPR011598 | GO:0046983 | |
Stsc60420g00037 | 189 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 13 | 181 | - | - | |
Stsc60420g00037 | 189 | Coils | Coil | 58 | 85 | - | - | |
Stsc60420g00037 | 189 | Gene3D | - | 13 | 94 | IPR036638 | GO:0046983 | |
Stsc60420g00037 | 189 | Pfam | Helix-loop-helix DNA-binding domain | 16 | 69 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60420g00037 | Stsc-Chr60420 | 157753 | 158616 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60420g00037 | 11 | 182 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G20970 | 44.809 | 2.90e-44 | 144 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Stsc60420g00037 | HLH | 1.3e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60420g00037 | - | - | gmx:100814407 | 212.231 |