Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00036 ATGGTTGGAGCTTTCGAAGTCGGACCTGTACCTTTTAACCCTGACGGATGGGGCCCTCCGGAATCCGCCGCTGCAGCCGCCGCCACCACCAACAGCAACCTCCCCCTCAACGTCCCCTTCGCTCCCTTCTCTCGCTCCGACAAGCTTGGCCGGATCGCTGACTGGACTCGCAACTTCAACAACCCCTCCCGCCCTAAGAATCCCGCCGATTCGGTCTTCGACTTCTCCAATGATGACTCCTTCCCTGCCTCTGCCGATGACGACTCCTCCTTCCGCCTCGTTGACGGTAAGCCCCCTCCAAGGCCCAAATTCGGCCCAAAGTGGCGCTTCCAGCAGCAGCGCCAGCTCCCTCAGCGCCGCGACGAAGAGGTCGAGGCTCGAAAGCGCGAGGCGGAGAAGGAACGTGCTCGCCGCGACCGCCTCTACCATCTCAACCGCTCAAACGCCAACGCTAACCGCCGCGAAGCCGCCGTGTTCAAATCGTCCGTCGATATCCAACCGGAATGGAACATGCACGACCAGATCCCGTTCTCCACCTTCTCGAAGCTCTCGTTCTCCGTCCCCGACCCCGAAGATCTACTCCTCTGCGGTGCTCTCGAGTACTACGACCGCACCTACGACCGCATCACGCCGAAGAACGAGCGGNNNNNNNNNNGCCTTGAGCGATTCAAGAATCGTAACTTCTTCAAGGTCACCACCACTGATGATCCCGTTATTCGCAGGCTCGCCAACGAGGATAAGGCGACGGTTTTCGCAACCGACACTATCCTCTCCACGCTCATGTGCGCCCCTAGGTCGGTTTACTCTTGGGATATCGTTGTGCAGCGCGTTGGGAACAAGCTGTTCTTCGATAAGCGTGATGGCTCCCAGCTTGATTTGCTCTCTGTTCATGAAACCTCTCAGGAGCCTCTTCCTGAAGCTAAGGATGATATCAACTCCGCACATTCGTTGAGTGTTGAAGCTGCTTATATTAACCAGAATTTCTCTCAACAGGTTCTGGTTAGGGACGGGAACAAGGTGAGTTTCGATGAGCCTAATCCTTTTGCGAACGAGGGCGAGGAAGTTGCTTCTGTGGCATATAGGTATAGGAGGTGGAAGCTCGACAATGATATGTATCTTGTGGCTAGGTGTGAGGTGCATAGTGTTCTTGAGCTGAATAAGAACAAGTCTTTCCTTACTTTGAATGCTTTGAATGAGTTTGATCCGAAGTATTCGGGTGTCGATTGGAGGCAGAAGTTGGAGACTCAGAGGGGAGCTGTGTTGGCCACTGAGCTCAAGAACAATGCTAATAAGTTGGCTAAATGGACTGCTCAGGCTCTGTTGGCCGGCGCGGATATGATGAAGCTGGGATATGTGTCTAGAATCCATCCCCGGGACCATTTCAATCATGTGATTTTGGCTGTGGTTGGATACAAGCCTAGGGACTTTGCAGCCCAAATCAATTTGAACACCTCTAATATGTGGGGAATTGTTAAGTCTATTGTGGACTTGTGCATGAAGCTCAATGAGGGGAAGTATGTTCTTGTGAAGGACCCGTCTAAGCCGCAGGTTAGGATCTATGAGGTCCCGCCGGATGCATTTGAGAACGACTACGTGGAGGAGCCACTTCCTGAGGAGGAACAAGTTCAACCTCCTGCAGAGGGTGCTGATGGTGTAGATACAACTGTTGCTGCGACCGATGTTGAGGATAAGCAGATAGATGATCAAGCTTAG 1713 0.5301 MVGAFEVGPVPFNPDGWGPPESAAAAAATTNSNLPLNVPFAPFSRSDKLGRIADWTRNFNNPSRPKNPADSVFDFSNDDSFPASADDDSSFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEEVEARKREAEKERARRDRLYHLNRSNANANRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFSVPDPEDLLLCGALEYYDRTYDRITPKNERXXXXLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLVRDGNKVSFDEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVLELNKNKSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLAGADMMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEEEQVQPPAEGADGVDTTVAATDVEDKQIDDQA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00036 570 Coils Coil 119 139 - -
Stsc60420g00036 570 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 521 IPR007783 GO:0003743|GO:0005737|GO:0005852
Stsc60420g00036 570 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 544 IPR007783 GO:0003743|GO:0005737|GO:0005852
Stsc60420g00036 570 MobiDBLite consensus disorder prediction 56 131 - -
Stsc60420g00036 570 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 533 IPR007783 GO:0003743|GO:0005737|GO:0005852
Stsc60420g00036 570 MobiDBLite consensus disorder prediction 114 131 - -
Stsc60420g00036 570 MobiDBLite consensus disorder prediction 1 28 - -
Stsc60420g00036 570 MobiDBLite consensus disorder prediction 532 570 - -
Stsc60420g00036 570 PIRSF Transl_init_eIF3d 1 551 IPR007783 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00036 Stsc-Chr60420 154040 156794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00036 4 568 Eukaryotic Initiation Factors Gene Family AT4G20980 77.002 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00036 K03251 - gmx:100799613 961.059