Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00031 ATGCACAAATCTGCTGAGATTTTCAGGAAGGAAGGCGATCTTGCTGACACTTCCGTTGCGCTTGATTCTCCTGAGGGGTTCATGCACGAATGGTGGTCTATTTTCTATGATGTATATATGTCTAGGACTAGGCTAGCCAAGGATCAGAGGACTGAGGCAGAACCTTCTACCAAGGTGGTCCCAGGAACTACATGTAATGCCGGAATTTGTATCCCTCCAATCCCTCGATCATCCATGAGCGAGCAGAGACCTGAACAACGTCAAGTCAACTCCAGCTTTAACAGGATGATGGCACAACCAGCTGCATGTCAACTACCATCAACATTCAATGCCAAAGAGCATCCTGGATATCTGGCTGTAGGTGCCGCCAGAGCAAACAATTTCAAGTTATTGGCTGTGACTAATTCAAATAATCCTCTGCAAGATGTAGGGAATAATGCCCAAAGGGAAGTTTCTAAGCTGGAAATTGAGCAATATCTCCTGGATTCACAGAACCAAGCATTAACTACCTCGTTTTTGGGAGCACCAAACTATCAACAGCAATTTCAAGCGCAGAAGTTGCAAAATCAGGAAGCAGTCCTTGCCCATGTACCTGGATGTAGTCCTAAAAGTCAGACTTTCCCAGTTCCTGGAAGCTCTATTGAATGCAACAATCATTGCACAAGTATTTCCAAGACTGAATTAAGCAAAATGGATAGGCAGGCGATGGGCTCAATGATTAGGGATCAGCAACCACAGATGCAGTCTCAGAATGTTGAGAAGAGCAAAAAGAGAAAGGCAATGATGCCCTTGAGGCCTGGAGAACGTGCCATGGATCATGCAGATGCAGAAGATGGAAAACCTATGGATGAAAGTGTGGAATCTTTCCTTTCATTTGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGACTCGTATTTCAGCTGCACATAGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAGGTTTTATCCACCCATTTTTCATGGGATGGAAAGGTATTGGCTAGTGCTGGGCATGAGAAGAAGGTTTTCCTTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGGCATTCACATCTCATTACAGATGTTCGGTTTAGACCAGGTTCTACTATATTTGCAACATCTTCCTTTGATCAATCTATAAAACTCTGGGATGCAGCAAGGCCCAACAAGTCACTGTTCCAACTCAATGGACATGCCGACCAAGTAATGTCATTGGACTTCAATCCAAGGAAGGCTAACATTCTTTGTTCGTGTGATAGCAATGATGTAATTCGTCTATGGGATGTCAACCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAGTAAACAAGTCAGGTTCCAGCCTTCTATTGGGAAGCTTCTGGCTGCTGTGTCAGGAAATAATCTCAAGATAGTTGATTTTGATAGCAATAGATTTCTGTACCATCTAAAGGGCCATGTCAAAGATATTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCGTCAGTGAAGATTGCGCACGTATCTGGTCTGCTGCAGATGGAAAATGTATAAGCGAATTGCATTCAAATTCAACCGGGAACAAGTTTCAATCGTGTGTATTTCATCCAGGATATCTTAATCTCTTAGTAATTGGTGGCTATCAGTCCCTTGAATTGTGGTGTACAACAGAGAACAGCAAAACACTGACAGTTCCTGCACACAAGGGATTAATTGCTGGACTAGCACATTCATCCCAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGTGTGAAACTCTGGAAATAA 1848 0.4269 MHKSAEIFRKEGDLADTSVALDSPEGFMHEWWSIFYDVYMSRTRLAKDQRTEAEPSTKVVPGTTCNAGICIPPIPRSSMSEQRPEQRQVNSSFNRMMAQPAACQLPSTFNAKEHPGYLAVGAARANNFKLLAVTNSNNPLQDVGNNAQREVSKLEIEQYLLDSQNQALTTSFLGAPNYQQQFQAQKLQNQEAVLAHVPGCSPKSQTFPVPGSSIECNNHCTSISKTELSKMDRQAMGSMIRDQQPQMQSQNVEKSKKRKAMMPLRPGERAMDHADAEDGKPMDESVESFLSFENEHADHRVVPFSNLTRISAAHSKNENKGFSFEEVSCLHSSKNKVLSTHFSWDGKVLASAGHEKKVFLWNMETLNCVTTTEGHSHLITDVRFRPGSTIFATSSFDQSIKLWDAARPNKSLFQLNGHADQVMSLDFNPRKANILCSCDSNDVIRLWDVNQRTCLHTTKGGASKQVRFQPSIGKLLAAVSGNNLKIVDFDSNRFLYHLKGHVKDILSICWDMSGNYVASVSEDCARIWSAADGKCISELHSNSTGNKFQSCVFHPGYLNLLVIGGYQSLELWCTTENSKTLTVPAHKGLIAGLAHSSQDEMIASASHDHCVKLWK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00031 615 Gene3D - 465 615 IPR015943 GO:0005515
Stsc60420g00031 615 Gene3D - 270 464 IPR015943 GO:0005515
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 615 IPR001680 GO:0005515
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 450 - -
Stsc60420g00031 615 SUPERFAMILY WD40 repeat-like 324 615 IPR036322 GO:0005515
Stsc60420g00031 615 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 404 IPR001680 GO:0005515
Stsc60420g00031 615 CDD WD40 332 615 - -
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 615 - -
Stsc60420g00031 615 SMART WD40_4 451 488 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 574 615 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 365 404 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 323 362 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 491 529 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 408 448 IPR001680 GO:0005515
Stsc60420g00031 615 SMART WD40_4 532 573 IPR001680 GO:0005515
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515
Stsc60420g00031 615 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 615 IPR044716 GO:0003714
Stsc60420g00031 615 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Stsc60420g00031 615 Pfam WD domain, G-beta repeat 367 404 IPR001680 GO:0005515
Stsc60420g00031 615 Pfam WD domain, G-beta repeat 581 615 IPR001680 GO:0005515
Stsc60420g00031 615 Pfam WD domain, G-beta repeat 494 528 IPR001680 GO:0005515
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 404 - -
Stsc60420g00031 615 MobiDBLite consensus disorder prediction 252 281 - -
Stsc60420g00031 615 MobiDBLite consensus disorder prediction 238 281 - -
Stsc60420g00031 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 457 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00031 Stsc-Chr60420 123630 128577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00031 347 614 Miscellaneous Gene Families AT5G08390 23.913 5.49e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc60420g00031 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00031 - - gmx:100783354 697.197