Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00030 ATGGCTTCTCTCACTTCTTCCCTCTCCTCTCTCTCCCTCCACTCTCATACATCCTCCGCCGCTTCTTCTTCACGTTTCTCTCTACTGCCCGCTTCCAAATTCACCTTCTCCCTCGCCGCCGCACGCTCCCGCACACTCACCCTCGCCGTCGCAAAAGCCAATCCCTCCGATGACATTGACACCTCGTTCTTCGACAACGTGAACCCAGAAGAAGAGGTGCCCTTCAACCCGCCGGAGCCCCCGGAAGGGTTCGTGGCCCCACCATCCTTCGACGAAGGGCCAATGGAAACCGAAGACGAAATCGCCGCGGCATACGAAGAATTGTACGGACCGGCGTACAGCGGGGTGAGCGTTCTTGGAAATGACATATACGTGATGGACTCGAAGATTAAGAGGGATACTGGGTTCGGGTCGAAGGCGAAGAAGGAGAAGGTGAAGGATGGGTTCGAGGAGAGGGTGGTGCAGGTGAGGAGGGTGACGAAGGTGGTTAAGGGAGGGAAGCAGCTGAGGTTCAGGGCAGTGGTGGTTGTCGGAGACAAGAAGGGGCAAGTGGGTGTCGGAGTTGGAAAGGCCAAAGAGGTAATTGCTGCTGTTCAGAAGTCTGCTGTTAATGCAAGGAGGAACATCATCACTGTTCCTTTGACTAAGTATTTGACTTTCCCACACAGAGCTGATGGAGATTATGGAGCAGCTAAGGTGATGCTGAGGCCTGCATCTCCAGGTACTGGAGTGATTGCTGGTGGGGCGGTGAGGATTGTTCTCGAGATGGCCGGAGTTGAGAATGCTCTCGGAAAGCAACTCGGCAGCAACAATGCACTCAACAATGCCAGGGCAACTGTTACTGCTGTTCTCAAAATGAAGCAGTTCCGTGAGGTTGCTGAAGAGCGTGGCATCCCAATGGAAGAATTATGGAAATGA 918 0.5392 MASLTSSLSSLSLHSHTSSAASSSRFSLLPASKFTFSLAAARSRTLTLAVAKANPSDDIDTSFFDNVNPEEEVPFNPPEPPEGFVAPPSFDEGPMETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKIKRDTGFGSKAKKEKVKDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPLTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVTAVLKMKQFREVAEERGIPMEELWK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00030 305 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 138 300 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc60420g00030 305 SUPERFAMILY dsRNA-binding domain-like 146 214 - -
Stsc60420g00030 305 Hamap 30S ribosomal protein S5 [rpsE]. 126 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Stsc60420g00030 305 Gene3D - 216 304 IPR014721 -
Stsc60420g00030 305 Pfam Ribosomal protein S5, N-terminal domain 149 213 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc60420g00030 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 297 IPR020568 -
Stsc60420g00030 305 ProSiteProfiles S5 double stranded RNA-binding domain profile. 149 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc60420g00030 305 Gene3D - 139 210 - -
Stsc60420g00030 305 FunFam 30S ribosomal protein S5 138 210 - -
Stsc60420g00030 305 NCBIfam 30S ribosomal protein S5 147 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Stsc60420g00030 305 Pfam Ribosomal protein S5, C-terminal domain 226 296 IPR005324 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00030 305 ProSitePatterns Ribosomal protein S5 signature. 166 198 IPR018192 -
Stsc60420g00030 305 FunFam 30S ribosomal protein S5 214 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00030 Stsc-Chr60420 122098 123490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00030 149 305 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 29.697 8.44e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00030 K02988 - gmx:100787105 405.601