Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00029 ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAAAAGAAGCTCGAGATCGATGATGACCAGAAACTTCGAGCATTTTGGGACAAGAGAATCTCACAAGAGGTTCTTGGTGATGCTTTGGGTGAGGAATTCAAAGGCTATGTCTTCAAGATCACTGGAGGTTGTGACAAACAGGGATTTCCAATGAAGCAGGGAGTGTTGACCCCAGGTCGTGTTCGCCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAACGGTGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCAGGCTTGACGGACGTTGAAAAGCCTAGGATGAGGGGTCCAAAGAGAGCCTCCAAGATCCGCAAGCTCTTCAACCTTTCCAAGGAAGATGATGTGAGGAAGTATGTCAACACATACAGGAGGACATTCACAACCAAAAATGGGAAAAAGGTGAGCAAAGCTCCAAAGATACAAAGGTTGGTGACTCCCCTGACACTTCAAAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCGAAAGCGAAATCAGAGGCAGCAGAGTACCAGAAACTCCTTGCCTCAAGGTTGAAGGAGCAAAGGGAACGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCAAAGCTCTCCAGTGCTGCTGTTAAACAAGCTACCTCTGCGTAG 753 0.4794 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAVKQATSA 250
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00029 250 Coils Coil 189 216 - -
Stsc60420g00029 250 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00029 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00029 250 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00029 250 PIRSF RPS6e 1 250 IPR014401 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00029 250 MobiDBLite consensus disorder prediction 219 250 - -
Stsc60420g00029 250 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Stsc60420g00029 250 MobiDBLite consensus disorder prediction 219 235 - -
Stsc60420g00029 250 Gene3D - 133 234 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc60420g00029 Stsc-Chr60420 119314 121420 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00029 1 245 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.653 1.02e-119 338
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00029 K02991 - gmx:100800507 437.958