Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00025 ATGAAGTACAAGGTTGATGAGGTTGAAGAAGACGAGGAAGATGAAGAATTCGAAGAGGAAGGAGGGATGAGTAGCAGCGACAATGATCATGAAGGAAGAAAGAATAAGAGAGTGGCAGCTGGTGTGTACACTAACACTACTAGTAATAGCAAGAGAGTCTCCAGAGGCTCATCAATGGCAGCAGCATCTTCTTGTCAAGTTGATAGTTGCAATGCAGATCTAAGCATGGCAAAGCAGTATCACAAACGCCATAAGGTTTGTGAGAACCATGCTAAAGCTCACTCTGTACTCATCTCTCACCAACAACAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGAGTCAAAAAGGAGCTGTAGAAAGCGTTTAGCTGGACACAATGAGAGGCGTCGCAAAAATTCATCTGATTACCAGCAAGGATAG 441 0.4331 MKYKVDEVEEDEEDEEFEEEGGMSSSDNDHEGRKNKRVAAGVYTNTTSNSKRVSRGSSMAAASSCQVDSCNADLSMAKQYHKRHKVCENHAKAHSVLISHQQQRFCQQCSRFHELSEFDESKRSCRKRLAGHNERRRKNSSDYQQG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00025 146 MobiDBLite consensus disorder prediction 40 58 - -
Stsc60420g00025 146 MobiDBLite consensus disorder prediction 1 58 - -
Stsc60420g00025 146 FunFam Squamosa promoter-binding-like protein 14 56 126 - -
Stsc60420g00025 146 SUPERFAMILY SBT domain 64 143 IPR036893 GO:0003677|GO:0005634
Stsc60420g00025 146 MobiDBLite consensus disorder prediction 23 37 - -
Stsc60420g00025 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 140 IPR044817 GO:0003677
Stsc60420g00025 146 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Stsc60420g00025 146 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Stsc60420g00025 146 MobiDBLite consensus disorder prediction 8 22 - -
Stsc60420g00025 146 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00025 Stsc-Chr60420 100955 101885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00025 55 142 SBP-box Gene Family AT2G33810 69.318 1.52e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60420g00025 SBP 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00025 - - vra:106775516 151.754