Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00021 ATGGCATCTTCTTCTTCTTCAGCTTCTGCTTCTCGTGAGGGACATTACAGAGGGGTTAGGAAGAGGCCATGGGGACGTTACGCCGCTGAGATACGCGATCCTTGGAAGAAGACACGTGTATGGCTTGGTACATTCGATACTCCTGAAGAAGCCGCCCTAGCTTACGACGGTGCAGCGCGTTCTCTCCGTGGTGCTAAGGCCAAGACTAACTTTCCTCCGGCACCGGCGCCTCCAGGAATCTGCCTCGATCTCAACGTCAACGTCAACAACGTTAACGCTCCTAACTCTGATCACCATCGCTGGCCATCCGTGCCTGTCCGCGCCGGCGGTGGTGGAATCTTCGGCGAGTTTCTCCACACTCGCGTTCTGAAGGACGTTGATCTGGCTCATCAACCGCATCATCCGGTTCCGCCGCCTCATCCGATGCATCATGCGGCAGCGCTAGCAGCTCATCACCACAGACGCGGCGAAGTGACAGTAGCTGTTTCCGGAGGTGGAGGAGTAGAGCAGGTGGCAGCAGGGAGTGGCTCAACGGCGTCGTATCTAGGGCTTGTTCGGCGCGGGATCCCAATCGACTTGAACGAACCTCCACCTTTGTGGCTTTGA 606 0.571 MASSSSSASASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPAPPGICLDLNVNVNNVNAPNSDHHRWPSVPVRAGGGGIFGEFLHTRVLKDVDLAHQPHHPVPPPHPMHHAAALAAHHHRRGEVTVAVSGGGGVEQVAAGSGSTASYLGLVRRGIPIDLNEPPPLWL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00021 201 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Stsc60420g00021 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 124 - -
Stsc60420g00021 201 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Stsc60420g00021 201 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Stsc60420g00021 201 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Stsc60420g00021 201 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Stsc60420g00021 201 FunFam Ethylene-responsive transcription factor 2 15 73 - -
Stsc60420g00021 201 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Stsc60420g00021 201 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Stsc60420g00021 201 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00021 Stsc-Chr60420 81422 82736 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00021 6 201 AP2-EREBP Transcription Factor Family AT1G28360 44.976 1.95e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60420g00021 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00021 - - aip:107624305 309.301