Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00019 ATGCCTTCCCTCTATTTAAACTCTCACTTGCTCCCCCATTTCCTCTACACCTTATCCCTCATACCCACACTCTTCCCAACCAAAACAAAAAACAATTCAGCTAAATTATTTATTATTATGGCTCCCAGGGAGAAGACGCCTGCCGTTAAAGTTAACGCTGGCGTTAAAGAGGTGCATTTTAGGGGTGTAAGGAAGAGGCCATGGGGAAGGTACGCAGCTGAAATCAGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGAACCTTCGACACCGCCGAGGATGCAGCGCGTGCATACGACGCCGCCGCCCGAGAGTTCCGCGGCCCCAAGGCTAAGACCAACTTCCCCTTCCCTGATTCCGACGACATCAACAGTAACAATAACAACATCGTCGTCGTAAAGAACAATAACCGCAGCCCTAGCCAGAGCAGCACCGTCGAGTCTTCCAGCCGTGACCGCGACTCCTACTCCGCCGCTGCCGCTGCCACCGCCGTCGCCGATTCCTCTCCGTTAGACCTTAACTTGGCCCCCGCAGGAGCTGGATTCGCCGGATCCATTCGGTTCCCATTCCAACAGCCGTTCGCCGTGTTTCCCGGCGGGATGCCGGCGGCGAAGCAAGCACTGTACCTAGACGCGGTGCTTCGCGCCAGCATGGCTAGTCACGGCCAGTTCGGTTTCGGTTATAACCGTCCCGCGGCGGCGGCGGCTGGAGCGCAGAGTGACTCAGACTCATCGTCGGTGATCGATCTGAACCAGAACGAAGGCGATGTTGCTAAGAATAACGGAAGAGGGTTGGTTCTTGACCTGAACGAACCTCCTCCTCAAGAGATGGCTTGA 837 0.5615 MPSLYLNSHLLPHFLYTLSLIPTLFPTKTKNNSAKLFIIMAPREKTPAVKVNAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDINSNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAAAATAVADSSPLDLNLAPAGAGFAGSIRFPFQQPFAVFPGGMPAAKQALYLDAVLRASMASHGQFGFGYNRPAAAAAGAQSDSDSSSVIDLNQNEGDVAKNNGRGLVLDLNEPPPQEMA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00019 278 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Stsc60420g00019 278 CDD AP2 59 116 IPR001471 GO:0003700|GO:0006355
Stsc60420g00019 278 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Stsc60420g00019 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 41 270 - -
Stsc60420g00019 278 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Stsc60420g00019 278 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Stsc60420g00019 278 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Stsc60420g00019 278 MobiDBLite consensus disorder prediction 240 258 - -
Stsc60420g00019 278 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
Stsc60420g00019 278 MobiDBLite consensus disorder prediction 133 153 - -
Stsc60420g00019 278 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Stsc60420g00019 278 MobiDBLite consensus disorder prediction 240 278 - -
Stsc60420g00019 278 Pfam AP2 domain 59 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00019 Stsc-Chr60420 67777 69435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00019 56 129 AP2-EREBP Transcription Factor Family AT5G44210 81.333 2.75e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60420g00019 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00019 K09286 - gmx:100170742 234.572