Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00005 ATGGGTGTGGACTACTATAAGATTCTGCAGGTTGACAAGAATGCCACAGATGATGATTTGAAGAAAGCTTATAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAATCCAAACAATAAGAAAGATGCCGAGTCTAAATTCAAGCAGATATCCGAAGCCTATGAGGTTCTGAGTGATCCACAGAAGAGAGCAATTTATGATAAGTATGGAGAAGAAGGACTAAAAGGACAAGTGCCACCTCCAGATGCAGGTGCAGGTGGAGCTTCATTCTTCCAAACTGGTAATGGACCAACAACTTTCAGGTTCAATCCTAGGAATGCAGATGACATCTTTGCCGAGTTCTTTGGGTTTTCAAGTCCCTTTGGGGGAATGGGAGGTTCCGGCACCGGCATGAGAGGTGGTGGAACAAGGTCATTTGGTGGAATCTTTGGTGATGACATGTTCAGTTCATTTGGAGAAGGAAGGCCAATGAGTCAGGGTCCAAGGAAGGCACCTCCTATAGAAAGAACATTGCCTTGCACCCTTGAGGAACTTTATAAGGGCACTACCAAGAAGATGAAGATCTCAAGGGAAATTGCTGATGCAAGCGGTAAAACTTTGCCGGTGGAAGAAATCTTAACCATAGAAATCAAACCCGGGTGGAAGAAGGGAACAAAGATAACGTTCCAGGAGAAAGGAAACGAGCAACCAAATGTGATTGCTGCAGATCTTGTGTTTGTGATTGATGAGAAACCACACCGTGTGTTCACAAGAGATGGAAATGACTTAGTTGTGACACAGAAGATTTCACTTGCTGAAGCTCTAACAGGTTACACTGTCCATTTGACAACTCTTGATGGAAGGGCTCTTAGCATTCCCATAAACAATGTCATTCATCCAACCTATGAAGAAGTGGTTCCTAGGGAAGGAATGCCAATTCCTAAAGACCCTTCTAAGAAGGGTAACCTTAGGATCAAATTTGATATCAAGTTCCCTGCAAGGTTGACATCTGACCAAAAATCTGGACTTAAGAAACTTCTGGGGCCATAA 1029 0.4344 MGVDYYKILQVDKNATDDDLKKAYRKLAMKWHPDKNPNNKKDAESKFKQISEAYEVLSDPQKRAIYDKYGEEGLKGQVPPPDAGAGGASFFQTGNGPTTFRFNPRNADDIFAEFFGFSSPFGGMGGSGTGMRGGGTRSFGGIFGDDMFSSFGEGRPMSQGPRKAPPIERTLPCTLEELYKGTTKKMKISREIADASGKTLPVEEILTIEIKPGWKKGTKITFQEKGNEQPNVIAADLVFVIDEKPHRVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRALSIPINNVIHPTYEEVVPREGMPIPKDPSKKGNLRIKFDIKFPARLTSDQKSGLKKLLGP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00005 342 SUPERFAMILY Chaperone J-domain 3 127 IPR036869 -
Stsc60420g00005 342 CDD DnaJ 4 59 IPR001623 -
Stsc60420g00005 342 Gene3D DnaJ domain 3 125 IPR036869 -
Stsc60420g00005 342 Gene3D - 166 244 - -
Stsc60420g00005 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc60420g00005 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc60420g00005 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc60420g00005 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc60420g00005 342 Pfam DnaJ C terminal domain 167 325 IPR002939 -
Stsc60420g00005 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 340 - -
Stsc60420g00005 342 FunFam DnaJ subfamily B member 13 3 125 - -
Stsc60420g00005 342 FunFam Dnaj homolog subfamily b member 163 244 - -
Stsc60420g00005 342 CDD DnaJ_C 165 328 - -
Stsc60420g00005 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc60420g00005 342 Gene3D - 246 325 - -
Stsc60420g00005 342 FunFam DnaJ subfamily B member 13 246 326 - -
Stsc60420g00005 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 253 IPR008971 GO:0006457|GO:0051082
Stsc60420g00005 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc60420g00005 342 Pfam DnaJ domain 4 67 IPR001623 -
Stsc60420g00005 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 334 IPR008971 GO:0006457|GO:0051082
Stsc60420g00005 342 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00005 Stsc-Chr60420 23381 25073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00005 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 7.54e-10 58.2