Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00004 ATGGGGTTAGATTACTATAAGACCTTGGAGGTTGAGAGAACTGCCACAGATGAAGACTTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAATCCAACTAACAAGAAAGATGCTGAGACTAAATTCAAACAGATCTCTGAAGCCTATGAGATTCTAAGTGATCCCCATAAGAGAGCAATTTGTGATCAATATGGAGAAGAGGTCCTCAAAGGGCAAAGACCAACTCCTGGTGCTGGTGGGGATGGACCAACAATGTTTAGGTTCAACCCCAGAAATGCAGAAAGCATCTTTGCTGAAGTTTTTGGATGTTCAAGCCCCTATGGAGGAATGGGAATGGGAATGGGAATGGGAAGAGGAAGGGGCATGAGGGGTGGTTATGGTGGATCTTGGGTGTCAAGATCCTTTGGTGGAATATTTGGCAGTGACATATTCACTTCAGCTAGAGAAGAAGCCAGACCCATGAATCAAAGTCCACGCAGGGCTCCACCCATTGAAAACACACTGCTTTGCACCCTTGAGGAACTCTATAAGGGCACTACCAAAAAGATGAAAATTTCAAGGGAAATTGTGGATGCAAGTAGGAAAGTTATTCATGTGGAGGAAATCTTGACCATTGAAATCAAACCTGGCTGGAAAAAGGGTACAAAAGTCACATTCCAGGAGAAAGGAAATCAGCAGCCAAATGTAATAGCAGCAGATATTGTGTTCATCATTGATGAGAAGCCTCACAATGTGTTTACAAGAGATGGTAATGATTTGGTTGTCACACAAGAGATATCCCTTATTGAAGCTGAAGCACAATCAGGATACACTGTCCATCTAACAACTCTAGATGGCAGGGATCTGACCATTTCCATAAACAATGCGATTCAACCGGACTATGAAGAGGTCGTTGCAGGAGAAGGTATGCCGTTTCCAAAAGATCCTTCAAAGAGGGGTGACCTCAGGATCAAGTTCAACATATTAGTCACAGACAAGGTAGATGCTGGAGCAGAGAAACAAAACTAA 1023 0.4301 MGLDYYKTLEVERTATDEDLKKAYRKLAMKWHPDKNPTNKKDAETKFKQISEAYEILSDPHKRAICDQYGEEVLKGQRPTPGAGGDGPTMFRFNPRNAESIFAEVFGCSSPYGGMGMGMGMGRGRGMRGGYGGSWVSRSFGGIFGSDIFTSAREEARPMNQSPRRAPPIENTLLCTLEELYKGTTKKMKISREIVDASRKVIHVEEILTIEIKPGWKKGTKVTFQEKGNQQPNVIAADIVFIIDEKPHNVFTRDGNDLVVTQEISLIEAEAQSGYTVHLTTLDGRDLTISINNAIQPDYEEVVAGEGMPFPKDPSKRGDLRIKFNILVTDKVDAGAEKQN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00004 340 Pfam DnaJ C terminal domain 170 326 IPR002939 -
Stsc60420g00004 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc60420g00004 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc60420g00004 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc60420g00004 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc60420g00004 340 SMART dnaj_3 3 62 IPR001623 -
Stsc60420g00004 340 CDD DnaJ 4 59 IPR001623 -
Stsc60420g00004 340 Gene3D DnaJ domain 3 115 IPR036869 -
Stsc60420g00004 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 330 IPR008971 GO:0006457|GO:0051082
Stsc60420g00004 340 Gene3D - 248 328 - -
Stsc60420g00004 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 333 - -
Stsc60420g00004 340 FunFam Dnaj homolog subfamily b member 165 246 - -
Stsc60420g00004 340 Pfam DnaJ domain 4 67 IPR001623 -
Stsc60420g00004 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc60420g00004 340 FunFam DnaJ subfamily B member 13 3 116 - -
Stsc60420g00004 340 FunFam DnaJ subfamily B member 13 248 329 - -
Stsc60420g00004 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 258 IPR008971 GO:0006457|GO:0051082
Stsc60420g00004 340 CDD DnaJ_C 167 331 - -
Stsc60420g00004 340 SUPERFAMILY Chaperone J-domain 4 120 IPR036869 -
Stsc60420g00004 340 Gene3D - 168 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00004 Stsc-Chr60420 21234 23057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00004 5 74 C2H2 Transcription Factor Family AT1G74250 31.081 1.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00004 K09510 - jre:108984177 464.536