Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00003 ATGGAAATTGATGAAAGTAATTATGGAGAATCCTGGGTTCAAGGACTTGCTGAAGGAGAGTATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTAGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCCATTCGTGTTGTTCTAGAGGATCGTCTGGAAGCAGCAAATGCTCTGAAGAAGCAGATGTGGGCCGAAGCACAGATAGATAAAGTTCGTCTAAAGGACGATACTATTAACAAACCAGATATTCCATTACTTATTGCCAACAAAGTTGAAACATATGACACATATCCTGCTGCTGTGGAAGGCAGTCAAAGTCCAATGCTTGACATTAATATTAATAGTATTAATAATGAAACATCGCCTGGCACTGCAGAAAACCAAAAGCCAGCACCTGCTGCACAGAGCTTGCATGGTGAAAAGTCCTCCCTAATTCAAGATTTGTGCACAGGCACAGGTCCAGATCACCCTCAGTTGCCGGTACCTCCACAATATTCAAAAAGATCACGTTCACAGTTGAAATCTTATATTGCTCACATAGCAGAGGAGATGTGTATCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCTTCTGCTTCTAGCTATGATCCTGGTTCTGGTAGGATCTTTGTTGAATATCATGATGGCAATTGGGGTCTTATTGATTCTGAAGAGGCCTTTGATATTCTTTTGGCAGCACTGGATTCAAGGGGGATCAGGGAATCTCATCTGCGCTTGATGTTGAAAAGGATTGAGAAGTCCTTTAAAGAAAATGTTCGAAGGAATACACATTGTGTCAGTGCCATAATAGGGAGCAAAGATAAATTTTCGATCAAAAGTGAAGATAATAATGGACCATATTCAACACCTGATCGCCATGTTGGATCTGACAGTCCTAGCAGTACTCTTCATAGCTTGAACTCTGACAAATTGGAAAACTCATCATCCTTCAACATTGAGCTTGGGGAAAGTGAGAGTGAGAAGAAAGCTGCCTTACAAAGGTATCAAGATTTTGAGAAGTGGATGTGGAAAGAGTGCTATAATTCATCAATACTATGTGCAACAAAATATGGGAAAAAGAGATGCAAACCTCAGGTGGACATTTGTGACCTCTGTCTCCATCCTTATTTTGTTGAAGATTCCCACTGTAAATCCTGCCACAGGACTTTCACTACAAATAATGGATTTAATTTTGCTAAGCATGCATTTCAATGTGGAGATAAGTTACCTAAAAATGTTTCTATGGAATCTTCTCTTCCCCTGCGGACAAGATTGTTTAAGGTGTCGTTAGCTTGTATTGAGGCATCAGTTCTCCCTGAAGCATTTGGAACAATTTGGACAAATGATGCTAGGAAGCATTGGGGTGTGAAGTTAAGCAAATCATCCTCTGTTGAGGAGCTTTTACAGATATTGGCCTTATTTGAGAAAGCTCTACAGAGAGATTTTCTATCATCAAACTTCTCTACAACAGACGAACTATTGGGACTGAGCAACATGGGTGGTAGTGCTTCACTTGCTTCCACTGATCCTGAATCAGTAGCTGTACTTCCATGGGTTCCACAAACTACTGCGGCGTTGTCTCTCAGGCTTTTTGAGATTGATTCATCTATCAATTATGTACATCTTGAGAGACCTGAGCCACGCAAGGAGAAAGAAGCGAGAGAGTACATCAAACTTCCCTTGCGGTATACTTCCTCCAAATGCAATAGGGAGGTTGAACCAGCAGAGTTAGGGCATGGTGATTTCATTAAAGATAAATCTGCTTCTAAGAAAATTGTACGAAGTGGTAATAAACGTGGACGAGGGTCTAATGATCAAGGACGGGTTAAAAAGATGTCTAGGAGAATGTACAGTTCCAAACGAGATACTGGCCGCCGAAATGTAAAGGTCAGTGAGAATCTAAGTGACAAGCTAAAACAGCAGGGACGAGTACTACAAGGATCAGCTGGTGGTCGTGGTCGCCGAACAGTAAGGAAACGGAGAGTGGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATACTGCAGCGAGTCATAGCCCCAATATTGATAGAGAACCATTGAGAAGATTTGATGAGGAATGGGATGGTGAAAGGGCAAGTCCAATAACTCCCGTCCACATTGAAATTGATGACAATAGCAACAGTGCCGAAGAGGTGGAATCTGATGACAACGGCCAAGCAGTGGAATATGATAGAGGTAACTGGGAGGTGGGTTATAATGGCGTTCCGTCCAACAGATGGAGTAGTGACTTTGTTGGAATGAGTGATGAAGAAGCGGATGCTTTTGAAGATGACAATGACAATGACAACAACAATGACAAAGGCATTGAAGAGAACGAAGAAGAGGATTCAGAAGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGCAAATAGGGTCATAAATGAAGAAGGCTCAGACTCATCTGAATCTGAAGATTCTTATGATTAG 2487 0.4194 MEIDESNYGESWVQGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRLKDDTINKPDIPLLIANKVETYDTYPAAVEGSQSPMLDININSINNETSPGTAENQKPAPAAQSLHGEKSSLIQDLCTGTGPDHPQLPVPPQYSKRSRSQLKSYIAHIAEEMCIYRSLPLGQDRRRNRYWQFVASASSYDPGSGRIFVEYHDGNWGLIDSEEAFDILLAALDSRGIRESHLRLMLKRIEKSFKENVRRNTHCVSAIIGSKDKFSIKSEDNNGPYSTPDRHVGSDSPSSTLHSLNSDKLENSSSFNIELGESESEKKAALQRYQDFEKWMWKECYNSSILCATKYGKKRCKPQVDICDLCLHPYFVEDSHCKSCHRTFTTNNGFNFAKHAFQCGDKLPKNVSMESSLPLRTRLFKVSLACIEASVLPEAFGTIWTNDARKHWGVKLSKSSSVEELLQILALFEKALQRDFLSSNFSTTDELLGLSNMGGSASLASTDPESVAVLPWVPQTTAALSLRLFEIDSSINYVHLERPEPRKEKEAREYIKLPLRYTSSKCNREVEPAELGHGDFIKDKSASKKIVRSGNKRGRGSNDQGRVKKMSRRMYSSKRDTGRRNVKVSENLSDKLKQQGRVLQGSAGGRGRRTVRKRRVEKRAVEDLLLGHTAASHSPNIDREPLRRFDEEWDGERASPITPVHIEIDDNSNSAEEVESDDNGQAVEYDRGNWEVGYNGVPSNRWSSDFVGMSDEEADAFEDDNDNDNNNDKGIEENEEEDSEADVMSEGSDGMANRVINEEGSDSSESEDSYD 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 612 638 - -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 291 320 - -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 599 638 - -
Stsc60420g00003 828 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 826 IPR044977 GO:0006357
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 117 168 - -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 786 801 - -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 721 828 - -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 292 320 - -
Stsc60420g00003 828 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 190 262 IPR028941 -
Stsc60420g00003 828 MobiDBLite consensus disorder prediction 117 133 - -
Stsc60420g00003 828 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 10 51 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00003 Stsc-Chr60420 14487 21805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00003 3 752 Homeobox Transcription Factor Family AT1G28420 40.281 1.72e-141 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00003 - - ccaj:109811517 1159.05