Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00066 ATGGCTATGGCTGCTCTCCGTCGCGAAGGGAGGCGATTCGCCACCCCGCTCCTCTCCTCTCCTATCCGCTCCTCTATCATCTCTCACTCTCATGAAGAAGTTGCCAATGGAGTGCGCTCTATTTCGACTCAAGTTGTGAGAAACAGGATGAAGAGTGTTAAGAATATCCAGAAGATCACAAAGGCAATGAAGATGGTTGCAGCTTCTAAGCTTAGAGCTATTCAAACCAGAACTGAAAACTCCCGTGGCCTCTGGCAGCCATTCACTGCCCTTCTGGGTGACGCCCCCAGTGTTGATGTCAAGAAGAGCGTTATTGTTACCATTTCTTCAGACAAAGGTCTCTGTGGTGGTATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAGCTCTGGGCCTGAGAAAGAGACAAAGTATGTCATATTGGGTGAGAAGGCCAAGGCTCAATTGTTACGTGATTCCAAGCAAGACATCTCTCTCAGCATAACTGAGCTGCAGAAGAATCCCCTGAACTATACTCAGAATGTGGAGTTTGACGCCTTAAAGATTGTGTTCAACAAGTTCCATTCAGTTGTCCAATTTATGCCAACTGTGTCAACTGTGCTCTCTCCTGAGATTATGGAGAGAGAGTCTGAAGCTGGGGGAAAGCTTGGGGAGTTAGACTCTTATGAAATTGAAGGTGCTGAGACAAAAGGAGAAGTTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTATCTTGTTCAATGGAGTGTTGGAGAATGCTTGCAGTGAACAGGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCCGGAGATATGCTTGATCGTCTCACTCTTACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATTTCTGGAGCTTCAGCACTGGAAGGTTAA 936 0.4594 MAMAALRREGRRFATPLLSSPIRSSIISHSHEEVANGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRTENSRGLWQPFTALLGDAPSVDVKKSVIVTISSDKGLCGGINSTSVKISRVLHKLSSGPEKETKYVILGEKAKAQLLRDSKQDISLSITELQKNPLNYTQNVEFDALKIVFNKFHSVVQFMPTVSTVLSPEIMERESEAGGKLGELDSYEIEGAETKGEVLQNLAEFQFSCILFNGVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00066 311 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 PRINTS ATP synthase gamma subunit signature 256 275 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 PRINTS ATP synthase gamma subunit signature 287 308 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 PRINTS ATP synthase gamma subunit signature 182 199 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 FunFam ATP synthase gamma chain 264 306 - -
Stsc60419g00066 311 FunFam ATP synthase subunit gamma 66 268 - -
Stsc60419g00066 311 CDD F1-ATPase_gamma 42 306 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 Gene3D - 66 268 - -
Stsc60419g00066 311 Pfam ATP synthase 44 309 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 ProSitePatterns ATP synthase gamma subunit signature. 295 308 IPR023632 -
Stsc60419g00066 311 Gene3D ATP synthase, gamma subunit, helix hairpin domain 46 306 - -
Stsc60419g00066 311 PANTHER ATP SYNTHASE GAMMA CHAIN 29 309 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 309 IPR035968 GO:0015986|GO:0045261|GO:0046933
Stsc60419g00066 311 PIRSF ATP_synthase_gamma 14 309 - -
Stsc60419g00066 311 NCBIfam ATP synthase F1 subunit gamma 42 309 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00066 Stsc-Chr60419 389214 393355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00066 33 309 Primary Pumps ATPases AT1G15700 27.596 2.92e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00066 K02136 - rcu:8286653 505.368