Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00062 ATGGCTTTCCTTCGTAGAGCTGGGAATATACTAAGCCAAGCCACAACTAGAAAGATCGCTTCGGATTTCTGTTCGATCAACTCTGTTTTCCGATCTGTACGGCGCATGTCTAATGCTCCGAGTTCAAAGCTCTTCATAGGAGGTGTTTCTTATTCCACTGATGAGCAGAGTTTGAGGGAAGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGAATAATTGTGGACCGTGATTCTGGTAGATCTAGAGGATTTGGGTTTATTACTTATAGCTCGGTTGAGGAGGCGTCGAGCGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGTGAAAGACCTCGTGGATTTCAGGGTGGTGGTTTTGGTGGCTCTTTTAATAATGCTCCCTATGGTGCTGGAGCTGGTTCTGGATACCAAGGTGGTTATGGTAACTCTCCATACGGTGCCAGTTCAGGCGGTGGCGGTGGCTATGGTGGTGCATATGGTGGCAATGTTGCTGGAGGTTATGGTAACGGAAGCAGTGGATATGGCGGAGATGGCTATGGATCAGGTGGTAATTTTGCAGGCAGTGCCTCTGGTGAGAACTATGCTGCTGATAACAGTTTTGGAACTGGAACAGCTGGTGGCAATTACAGTGGAAGTGGGATGAATAATGCAAATGACAATAGCTTTGCAAGCGGAGGATATGGTGGTAACAGTGGGAATGGTGGAAGAAATGATATTGGTACTTATGGTAATGCTGCTGCTAGTGGTGGAGGCTACGGAGGCTATGCCCCGGCTTCTGGATTTGACAAGAACACTTCTGGTGGATTTGCTAACAGCGATAACTATGCTAGCGCTGCTGGTGGTGGCAGCAACAGTTTCCCCGGTAGTCAATACAATGGAAGTGCCATGGCTGGGTATGGCAGTGGAGGTGTCGGTTCTGGCAGCAATTTTGCCGGGGGATATGATGGAAATGGAGCAACAGGATATGGTAGCAATAGCACTAATGAATTCAATAACAATCAAGGTACTAATGTGGATGGTTTTGGAGGCTCCATGGAACAAAATTTCAGGGGTGACTATGAGGAATCCGCTGCTTACGCAAAACGGGCTTGA 1125 0.4729 MAFLRRAGNILSQATTRKIASDFCSINSVFRSVRRMSNAPSSKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFNNAPYGAGAGSGYQGGYGNSPYGASSGGGGGYGGAYGGNVAGGYGNGSSGYGGDGYGSGGNFAGSASGENYAADNSFGTGTAGGNYSGSGMNNANDNSFASGGYGGNSGNGGRNDIGTYGNAAASGGGYGGYAPASGFDKNTSGGFANSDNYASAAGGGSNSFPGSQYNGSAMAGYGSGGVGSGSNFAGGYDGNGATGYGSNSTNEFNNNQGTNVDGFGGSMEQNFRGDYEESAAYAKRA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00062 374 MobiDBLite consensus disorder prediction 336 374 - -
Stsc60419g00062 374 SUPERFAMILY RNA-binding domain, RBD 37 152 IPR035979 GO:0003676
Stsc60419g00062 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Stsc60419g00062 374 MobiDBLite consensus disorder prediction 336 354 - -
Stsc60419g00062 374 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 201 - -
Stsc60419g00062 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc60419g00062 374 PRINTS Eggshell protein signature 164 179 - -
Stsc60419g00062 374 PRINTS Eggshell protein signature 190 200 - -
Stsc60419g00062 374 PRINTS Eggshell protein signature 38 54 - -
Stsc60419g00062 374 PRINTS Eggshell protein signature 235 253 - -
Stsc60419g00062 374 SMART rrm1_1 43 116 IPR000504 GO:0003723
Stsc60419g00062 374 CDD RRM2_NsCP33_like 43 118 - -
Stsc60419g00062 374 Gene3D - 20 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00062 Stsc-Chr60419 376068 378032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00062 38 138 Eukaryotic Initiation Factors Gene Family AT3G16380 27.885 9.09e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00062 K12741 - ccaj:109815980 233.032