Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00061 ATGTCAAATGCTCCGAGTTCAAAGCTCTATATAGGAGGTGTTTCGCATTCCAATGATGAGCAAAGTTTGAGGCAAGTTTTTGGGAAATATGATGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGTAGATCCAGAGGATTTGGGATTGTTACTTACAGATCAGTTGAGGAGGCGTCAAGCGCCATTCGGGCCTTAAATGGGCAGGATCTATATGGTCGCCGAGTTAGGGTAAATTCTGTAGGTGAAAGACCTCGTGGATTTCGTGCTGGAGCTGATTCTGGATACCAAGGTGGTTATGCTAACCCTCCATACGGTGCCAGTTCAGGCGGCGGCGGCGGCAGCTATGGTGGAAATTGCAGTGGAAGTGAGATGAATAATGCAAATGACAATAGCTTTGCAAGCGAAGGTTATGGTGATAATAGTGGGAATGGGGGAAGAAATGATGATATTGGAAATTATGGTGCTTATGGAGGCTATGCCGGCTATGTGAGAGATCCTGACTGTCCTGAGCATAATCCTAAGGTGGTAAAACTGGGAATGGAATCAGTGGAGGAAAGAGGGACGATAGTGGTAATGGCAAAACTGGGAATGGAATCAGTGGAGGAAAGAGTGAAGTTAGCGATGATGGGACTAACCAGAATGTTGGTAATGGCTGTGGTTCTCCTGATGTTGTTTGGAAAAGAATTTTAA 699 0.4506 MSNAPSSKLYIGGVSHSNDEQSLRQVFGKYDDVVDARIIVDRDSGRSRGFGIVTYRSVEEASSAIRALNGQDLYGRRVRVNSVGERPRGFRAGADSGYQGGYANPPYGASSGGGGGSYGGNCSGSEMNNANDNSFASEGYGDNSGNGGRNDDIGNYGAYGGYAGYVRDPDCPEHNPKVVKLGMESVEERGTIVVMAKLGMESVEERVKLAMMGLTRMLVMAVVLLMLFGKEF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00061 232 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc60419g00061 232 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Stsc60419g00061 232 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 160 - -
Stsc60419g00061 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Stsc60419g00061 232 Gene3D - 1 134 IPR012677 -
Stsc60419g00061 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00061 Stsc-Chr60419 372076 373604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00061 3 86 Eukaryotic Initiation Factors Gene Family AT3G16380 39.286 1.02e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00061 K12741 - gmx:100782808 148.673