Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00060 ATGGCTTTCCTTCGTAGAGCTGGGAATATGCTAAGGCAAGCCACGACTAGAAAGTTCGTTTCGGATTTCTGTTCAATCAACTCTGTTTTCCGATCTGTACGGTGCATGTCAAATGCTCCGAGTTCAAAGCTCTATATAGGAGGTATTTCGCATTCCAATGATGAGCAAAGTTTGAGGCAAGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAAGATAATTGTGGACCGTGATTCTGGTAGATCCAGAGGATTTGGGATTGTTATTTACAGATCAGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAAATGGGCAGCGCAAGGAAAGAACGCCTCTGTCTCTCTTTTTGGTTTTCAACCAAAAGACCTAA 372 0.4301 MAFLRRAGNMLRQATTRKFVSDFCSINSVFRSVRCMSNAPSSKLYIGGISHSNDEQSLRQVFGKYGDVVDAKIIVDRDSGRSRGFGIVIYRSVEEASSAIQALNGQRKERTPLSLFLVFNQKT 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00060 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 109 IPR000504 GO:0003723
Stsc60419g00060 123 Gene3D - 31 117 IPR012677 -
Stsc60419g00060 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc60419g00060 123 SUPERFAMILY RNA-binding domain, RBD 38 108 IPR035979 GO:0003676
Stsc60419g00060 123 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 106 - -
Stsc60419g00060 123 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00060 Stsc-Chr60419 367798 368859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00060 42 105 Eukaryotic Initiation Factors Gene Family AT3G16380 43.750 2.80e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00060 K12741 - ccaj:109815980 143.28