Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00039 ATGTCGCCGTTGCCGGGGATCGAACCCGGCTTTCAAAATTCGCACTCACTCACAGTCACTCTCTGCTTCAAAGTTCAAACCCTCTCTGCCTCACTCACTCTTGCTCCTCCTCCTCCTCCTCCATCTGCAATTTCTGATATGGAAAGCAGCAGCAGCAGCAAGAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAAGCTCTTCAAGCACTCAGAGAACTCATCATCTTCCCTCGCCTATTTTCTCCACAAGCACACAAACTTGGACTCAAATGGCCACGGGGATTGCTGCTCTATGGCCCGCCGGGCACCGGAAAGACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCACATTTGAAAATTATTAGTCCACACACGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCGTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAACACATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAAAGGGAGCAAGATGTTCGAGTTGCCTCGCAACTCTTTACACTGATGGACTCTAATAAACCCACATCTTCTACGGCTGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCTCTAAGAAGATCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGACCCGAGTGTTGACTTAAAAATCATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCACTGTGTCGTGAAGCTACCATGTTTGCTGTTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGACTGGAAAAACGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTAACTTGGGAAGACATTGGGGGATTAAAAGAGTTGAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGAGGAATTCTTCTCCATGGACCTCCTGGATGCTCAAAAACAACACTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTGCGTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTCGGAGAGGGGGAAGCTTTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCAGCTCCCAGTATAATATTCTTTGATGAGGCTGATGTGGTGGCTACAAAACGGGGTGATAGTTCAAGCAATAGTGCAACAGTTGGTGAGAGGCTTTTATCCACTTTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCAACAAATCGCCCTTATGCAATCGATGCTGCACTCATGCGTCCTGGACGTTTTGATCTGGTTCTTTATGTGCCACCGCCCGATTTGGAGGCTCGATACGAGATACTATGTGTGCACACGCGTAATATGAAAACAGCAAGTGACGTCAATCTCAGACGACTAGCAGAAGACACTGAACTCTTCACAGGTGCTGAACTGGAGGGGCTATGCAGGGAAGCTGGAATTGTGGCTTTAAGGGAAGACATATCGGCTGCTGTCGTGTGTGATCGCCATTTCCAGGTAGTGAAAGATTCCGTAAAACCGGCACTAACAAAAGCCGAAATTGATTCATACTCATCTTTCATGAAGACCTCATCTCAAGCTTTGCCTAGACATTTTGATTCAGGTATGAAATCAGATAGCAACAGAAAGAATGGGTTGAATCCAATGTCTTTGGTTAAAATTAGTGTTGTCAGTTTTGTGTTATTTGCTGCTGCTGCTGCTAAATACTATATCATAGATAGAGACCAAATTGTACCTCATCATATATCAATGACATGA 1962 0.448 MSPLPGIEPGFQNSHSLTVTLCFKVQTLSASLTLAPPPPPPSAISDMESSSSSKNQWSAEEAIGGNAQALQALRELIIFPRLFSPQAHKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLKIISPHTVHRAHAGESEKILREAFAEAASQVALGNTSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPSVDLKIIAASCNGYVGADLEALCREATMFAVKRSNTNEDAINFSLTMEDWKNARSIVGPSITRGVTVEVPKVTWEDIGGLKELKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQAAFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMKTASDVNLRRLAEDTELFTGAELEGLCREAGIVALREDISAAVVCDRHFQVVKDSVKPALTKAEIDSYSSFMKTSSQALPRHFDSGMKSDSNRKNGLNPMSLVKISVVSFVLFAAAAAKYYIIDRDQIVPHHISMT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00039 653 CDD RecA-like_CDC48_r2-like 338 498 - -
Stsc60419g00039 653 FunFam Cell division control protein 48-B-like protein 317 501 - -
Stsc60419g00039 653 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 448 467 - -
Stsc60419g00039 653 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 102 121 - -
Stsc60419g00039 653 MobiDBLite consensus disorder prediction 34 58 - -
Stsc60419g00039 653 Gene3D - 502 581 - -
Stsc60419g00039 653 FunFam spermatogenesis-associated protein 5-like protein 1 501 587 - -
Stsc60419g00039 653 Gene3D - 317 501 IPR027417 -
Stsc60419g00039 653 Gene3D - 42 235 IPR027417 -
Stsc60419g00039 653 Gene3D - 236 316 - -
Stsc60419g00039 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 315 IPR027417 -
Stsc60419g00039 653 Pfam AAA+ lid domain 522 567 IPR041569 -
Stsc60419g00039 653 Pfam AAA+ lid domain 256 304 IPR041569 -
Stsc60419g00039 653 CDD RecA-like_CDC48_NLV2_r1-like 62 232 - -
Stsc60419g00039 653 FunFam Cell division control protein 48 homolog B 55 233 - -
Stsc60419g00039 653 SMART AAA_5 94 236 IPR003593 GO:0016887
Stsc60419g00039 653 SMART AAA_5 363 502 IPR003593 GO:0016887
Stsc60419g00039 653 ProSitePatterns AAA-protein family signature. 470 488 IPR003960 GO:0005524|GO:0016887
Stsc60419g00039 653 PANTHER AAA-FAMILY ATPASE 53 592 - -
Stsc60419g00039 653 Pfam ATPase family associated with various cellular activities (AAA) 367 499 IPR003959 GO:0005524|GO:0016887
Stsc60419g00039 653 Pfam ATPase family associated with various cellular activities (AAA) 98 232 IPR003959 GO:0005524|GO:0016887
Stsc60419g00039 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 585 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00039 Stsc-Chr60419 231823 237425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00039 298 611 Calmodulin-binding Proteins AT3G56690 45.223 8.21e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00039 - - gmx:100814288 987.638