Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60419g00039 | ATGTCGCCGTTGCCGGGGATCGAACCCGGCTTTCAAAATTCGCACTCACTCACAGTCACTCTCTGCTTCAAAGTTCAAACCCTCTCTGCCTCACTCACTCTTGCTCCTCCTCCTCCTCCTCCATCTGCAATTTCTGATATGGAAAGCAGCAGCAGCAGCAAGAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAAGCTCTTCAAGCACTCAGAGAACTCATCATCTTCCCTCGCCTATTTTCTCCACAAGCACACAAACTTGGACTCAAATGGCCACGGGGATTGCTGCTCTATGGCCCGCCGGGCACCGGAAAGACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCACATTTGAAAATTATTAGTCCACACACGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCGTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAACACATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAAAGGGAGCAAGATGTTCGAGTTGCCTCGCAACTCTTTACACTGATGGACTCTAATAAACCCACATCTTCTACGGCTGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCTCTAAGAAGATCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGACCCGAGTGTTGACTTAAAAATCATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCACTGTGTCGTGAAGCTACCATGTTTGCTGTTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGACTGGAAAAACGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTAACTTGGGAAGACATTGGGGGATTAAAAGAGTTGAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGAGGAATTCTTCTCCATGGACCTCCTGGATGCTCAAAAACAACACTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTGCGTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTCGGAGAGGGGGAAGCTTTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCAGCTCCCAGTATAATATTCTTTGATGAGGCTGATGTGGTGGCTACAAAACGGGGTGATAGTTCAAGCAATAGTGCAACAGTTGGTGAGAGGCTTTTATCCACTTTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCAACAAATCGCCCTTATGCAATCGATGCTGCACTCATGCGTCCTGGACGTTTTGATCTGGTTCTTTATGTGCCACCGCCCGATTTGGAGGCTCGATACGAGATACTATGTGTGCACACGCGTAATATGAAAACAGCAAGTGACGTCAATCTCAGACGACTAGCAGAAGACACTGAACTCTTCACAGGTGCTGAACTGGAGGGGCTATGCAGGGAAGCTGGAATTGTGGCTTTAAGGGAAGACATATCGGCTGCTGTCGTGTGTGATCGCCATTTCCAGGTAGTGAAAGATTCCGTAAAACCGGCACTAACAAAAGCCGAAATTGATTCATACTCATCTTTCATGAAGACCTCATCTCAAGCTTTGCCTAGACATTTTGATTCAGGTATGAAATCAGATAGCAACAGAAAGAATGGGTTGAATCCAATGTCTTTGGTTAAAATTAGTGTTGTCAGTTTTGTGTTATTTGCTGCTGCTGCTGCTAAATACTATATCATAGATAGAGACCAAATTGTACCTCATCATATATCAATGACATGA | 1962 | 0.448 | MSPLPGIEPGFQNSHSLTVTLCFKVQTLSASLTLAPPPPPPSAISDMESSSSSKNQWSAEEAIGGNAQALQALRELIIFPRLFSPQAHKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLKIISPHTVHRAHAGESEKILREAFAEAASQVALGNTSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPSVDLKIIAASCNGYVGADLEALCREATMFAVKRSNTNEDAINFSLTMEDWKNARSIVGPSITRGVTVEVPKVTWEDIGGLKELKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQAAFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMKTASDVNLRRLAEDTELFTGAELEGLCREAGIVALREDISAAVVCDRHFQVVKDSVKPALTKAEIDSYSSFMKTSSQALPRHFDSGMKSDSNRKNGLNPMSLVKISVVSFVLFAAAAAKYYIIDRDQIVPHHISMT | 653 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60419g00039 | 653 | CDD | RecA-like_CDC48_r2-like | 338 | 498 | - | - | |
Stsc60419g00039 | 653 | FunFam | Cell division control protein 48-B-like protein | 317 | 501 | - | - | |
Stsc60419g00039 | 653 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 448 | 467 | - | - | |
Stsc60419g00039 | 653 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 102 | 121 | - | - | |
Stsc60419g00039 | 653 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Stsc60419g00039 | 653 | Gene3D | - | 502 | 581 | - | - | |
Stsc60419g00039 | 653 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 501 | 587 | - | - | |
Stsc60419g00039 | 653 | Gene3D | - | 317 | 501 | IPR027417 | - | |
Stsc60419g00039 | 653 | Gene3D | - | 42 | 235 | IPR027417 | - | |
Stsc60419g00039 | 653 | Gene3D | - | 236 | 316 | - | - | |
Stsc60419g00039 | 653 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 62 | 315 | IPR027417 | - | |
Stsc60419g00039 | 653 | Pfam | AAA+ lid domain | 522 | 567 | IPR041569 | - | |
Stsc60419g00039 | 653 | Pfam | AAA+ lid domain | 256 | 304 | IPR041569 | - | |
Stsc60419g00039 | 653 | CDD | RecA-like_CDC48_NLV2_r1-like | 62 | 232 | - | - | |
Stsc60419g00039 | 653 | FunFam | Cell division control protein 48 homolog B | 55 | 233 | - | - | |
Stsc60419g00039 | 653 | SMART | AAA_5 | 94 | 236 | IPR003593 | GO:0016887 | |
Stsc60419g00039 | 653 | SMART | AAA_5 | 363 | 502 | IPR003593 | GO:0016887 | |
Stsc60419g00039 | 653 | ProSitePatterns | AAA-protein family signature. | 470 | 488 | IPR003960 | GO:0005524|GO:0016887 | |
Stsc60419g00039 | 653 | PANTHER | AAA-FAMILY ATPASE | 53 | 592 | - | - | |
Stsc60419g00039 | 653 | Pfam | ATPase family associated with various cellular activities (AAA) | 367 | 499 | IPR003959 | GO:0005524|GO:0016887 | |
Stsc60419g00039 | 653 | Pfam | ATPase family associated with various cellular activities (AAA) | 98 | 232 | IPR003959 | GO:0005524|GO:0016887 | |
Stsc60419g00039 | 653 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 325 | 585 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60419g00039 | Stsc-Chr60419 | 231823 | 237425 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60419g00039 | 298 | 611 | Calmodulin-binding Proteins | AT3G56690 | 45.223 | 8.21e-83 | 280 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60419g00039 | - | - | gmx:100814288 | 987.638 |