Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00038 ATGGAGTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTATGTTTCAAATGATGCAATTTCCCCTCCCAACACTCTTGGGAGGAACACCAAAGGCTCATTCTTGGGTTGGGAACTGAAAACCCCAGCTGGTGGTGGTTTTTCAATTGAGAATCAAGGTTTTGAGGAATTGGGGTTGCCCCAAGATCCTAATAATCCAATTGGTAATGTTCATAGTAGTAGAAAGATTGATAGTGACCCTGCTGCCATGGCTACTCCAAATGCATTCTCTTCAAGGGAGGACTTTAATTCCAAGGTTTCAGCCTCTTTGGGGGACTCTAATAATGGTGGTGGCTGTGATTCACTCATTGACTTGAAGCTTGGTAGGTTTCCTGATCATGGTGATGTGGGTGTGGTGGCTCCGGCATTCCCCAAAGGGGGGCCGATTTTGTCGTCGTCGGAGTCTTCCACGCCGACGAAGAGGGTTCGAGCTTCCGGGGTTCACTCTCAGACAGCATACTGCCAGGTCTATGGATGCAACAAGGATTTGAGTGGCTGCAAGGATTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTTCCAAAGTTATTGTCAATGGTATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAACGAGCGTCGAAGAAAACCACAAGTTGGTATACACTCCGGAAAGCCTGGGAGGTTGCTTCAGCCATATGGTGAAAGTAGATTCCAAGGAAACATGCTAACATCAGCATCTTTCATCTGCCAAGAGATACTCCCTGCCGGGGTCTTATCTTCCGAGAGATACGGAACAAGTGATTGGTGGAGACCTATAAAATCCGAAGATAGTGCCGGGTTTAGGCATATTTCTTCTATTCCTATCTCTAATGGACACCCTCCCGAGTCACGACCCCTGTTTGCTTCATACAATGAGAAGCAATTTCCGTTTCTGCATGAAAATAATGGCGCTACATCCGGCTCGAGTAGTATCTTCTGCGAAAACAATAGCTCATATCCAGCTGCCATAGGAGGCGCGAACTCGGGGTCACAATCATTATTCCAGGACACGTCCATAGGAAGCGAGGACTTCAATGTTTTTGATACAGAATCAGCTGTTCAAGGACTATCTGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCTGTGGTTCGCTCGATGGTCATTCGGACCATGACCAGCCATAACAGTAGCCCTTACGCCATGAGCCAGGTCTCCGAAAAGATGATAGGAATAAGCTCCCATGCTTCGAGTGGTGTCTCTGATAGGTTTCCGTCCGAGTTGAATCCTACAGATGGAAGTCCTCTTAGCTCTGTGCTGATACCTGACAACAATGACATTATCAACTTTGAAATGGCTGATGGAATGTTCCAAGGGTCGGATTTCGTGAATGTGAAAGATCGTCTCTCGTGTGATGATGTCCCAACTATCGACTTGCTTCAGCTGTCTTCGCAGCTTCAGCGAGTCGAGAGCGAGAGGCAATCCTTGCAGGTCAAGCAAGAAAACGATTCATCCGTCTCTCTCCGGATTACTTAA 1653 0.4646 MESWSYVSEEKGYVSNDAISPPNTLGRNTKGSFLGWELKTPAGGGFSIENQGFEELGLPQDPNNPIGNVHSSRKIDSDPAAMATPNAFSSREDFNSKVSASLGDSNNGGGCDSLIDLKLGRFPDHGDVGVVAPAFPKGGPILSSSESSTPTKRVRASGVHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKPGRLLQPYGESRFQGNMLTSASFICQEILPAGVLSSERYGTSDWWRPIKSEDSAGFRHISSIPISNGHPPESRPLFASYNEKQFPFLHENNGATSGSSSIFCENNSSYPAAIGGANSGSQSLFQDTSIGSEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPVVRSMVIRTMTSHNSSPYAMSQVSEKMIGISSHASSGVSDRFPSELNPTDGSPLSSVLIPDNNDIINFEMADGMFQGSDFVNVKDRLSCDDVPTIDLLQLSSQLQRVESERQSLQVKQENDSSVSLRIT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00038 550 MobiDBLite consensus disorder prediction 455 476 - -
Stsc60419g00038 550 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 464 IPR044817 GO:0003677
Stsc60419g00038 550 FunFam Squamosa promoter-binding-like protein 14 157 227 - -
Stsc60419g00038 550 Gene3D - 156 227 IPR036893 GO:0003677|GO:0005634
Stsc60419g00038 550 Coils Coil 518 538 - -
Stsc60419g00038 550 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Stsc60419g00038 550 SUPERFAMILY SBT domain 164 244 IPR036893 GO:0003677|GO:0005634
Stsc60419g00038 550 Pfam SBP domain 166 239 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00038 Stsc-Chr60419 226676 230243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00038 115 282 SBP-box Gene Family AT1G69170 53.571 1.60e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60419g00038 SBP 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00038 - - gmx:100777766 760.755