Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00036 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGGATAGAGAACAAGGTGAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCTTATGAGCTTTCAGTTCTATGTGATGCTGAGGTTGCTCTCATGATCTTCTCAAACCGTGGCAAGCTCTATGAGTTCTCAAGTTCCTCCAGCATGATGAAAATCATAGAGAAATATCATATGTATAATTATAACTTGTCGCATACCACCAGCCAAGCAACAAATGGTGACACTCAGAACATTTACCAGGACTATTTGAAGCTGAAAGCATATGTAGAACTCCTACAACGTTCACAAAGGAACCTTCTTGGAGAAGATCTAACCCAAACGACTTCAACGGAGCTTCAGCAGCTTGAGAATCAATTAGAGTCGGCATTGACCAATATTAGGTCAACCAAGACTCAGTTCATGCTTGATCGTCTTGCAGATCTTCAAAACCGGGAAAGCGCACTTGTTGACGTTAACACAGCTTTAAGAACTAAGTTGGAAGAAATTCAGAATTCAGAAGTTCCTCTGAGGCTGGCTTGGGATGGTGAAGAGCCTAACAACCAATGCACTCATCTCTTTCCTCCTCATTCAGATTTTACTTTCCAAACTACTCTTGGGGTGGTTACTCCCACTTTGCAGATTGGGTATAATAATCCAACGGGTGGTGATGAGGATGGAAATGTTGAAGCATGCGTCTCTGGTTGGATGGTATGA 735 0.4245 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSSSSSMMKIIEKYHMYNYNLSHTTSQATNGDTQNIYQDYLKLKAYVELLQRSQRNLLGEDLTQTTSTELQQLENQLESALTNIRSTKTQFMLDRLADLQNRESALVDVNTALRTKLEEIQNSEVPLRLAWDGEEPNNQCTHLFPPHSDFTFQTTLGVVTPTLQIGYNNPTGGDEDGNVEACVSGWMV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00036 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc60419g00036 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Stsc60419g00036 244 FunFam MADS-box transcription factor 1 13 85 - -
Stsc60419g00036 244 Pfam K-box region 88 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60419g00036 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60419g00036 244 Coils Coil 119 146 - -
Stsc60419g00036 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Stsc60419g00036 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60419g00036 244 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00036 Stsc-Chr60419 195831 202862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00036 1 176 MADS-box Gene Family AT5G15800 61.364 6.12e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60419g00036 K-box 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00036 K09264 - gmx:100797819 274.633