Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00035 ATGGGGCGAGGGAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAACCGCCAAGTCACTTTCTCAAAGAGAAGAGCTGGTTTGCTTAAGAAGGCTAATGAGATCTCCGTTCTCTGTGATGCCGAGGTTGCTCTCATCGTCTTCTCTACCAAGGGAAAGCTCTTTCAATTCTCCAGCGATCCATGTATGGAGAGAATAATCGAACGGTATGAGAGGTATTCATATGCGGAGAGACAGCATCAGCTTGTGGCAAATGCTCAAGGATCAGAAACAAATTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTGTTACAAAGGAATCAAAGGAATTTTTTGGGGGAAGATCTTCAAGGCCTAAGTATGAAAGAGCTTCAAAATTTAGAATATCAGCTTGATTCTGCTCTCAAACAAATTAGATCTCGAAAGAACCAAATCATGTACGAGAATATCTCACTGCTTCAGAAAAAGGAGAGAGCTCTAAATGAACAAAACAATTCATTATCTAAGAAGATCAAGGGGAAGGAAAAAGCAATCACAGAACAGACTCATCAAATGGAGCTGCAAGATAATTATATGGATCTACCCCCTTCAATTGTTGCACCTCCTCAAACCTCAGAAAACTTGAATATTAGAGGAATAATGCTACAAGAAGGTAGAAGTGATGGAGAACATAATAATGATAATGAAGATTTCCAAACTAATCTTAGGGCTCATAATAATACCCTTCTTCCCAATTGGATGATGCTTCCTCCTACAAATGAATTGATGAATTGA 783 0.3959 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSTKGKLFQFSSDPCMERIIERYERYSYAERQHQLVANAQGSETNWTLEHAKLKARVEVLQRNQRNFLGEDLQGLSMKELQNLEYQLDSALKQIRSRKNQIMYENISLLQKKERALNEQNNSLSKKIKGKEKAITEQTHQMELQDNYMDLPPSIVAPPQTSENLNIRGIMLQEGRSDGEHNNDNEDFQTNLRAHNNTLLPNWMMLPPTNELMN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00035 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Stsc60419g00035 260 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Stsc60419g00035 260 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Stsc60419g00035 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 Coils Coil 127 147 - -
Stsc60419g00035 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Stsc60419g00035 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60419g00035 260 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60419g00035 260 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc60419g00035 260 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60419g00035 260 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00035 Stsc-Chr60419 185599 190279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00035 1 229 MADS-box Gene Family AT1G26310 55.882 1.02e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60419g00035 K-box 8.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00035 K09264 - gmx:100816836 316.62