Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00028 ATGCAGGACTCGCCTTCTTCCGCCGCTGACTGTGGCCGGTTTTTCGCCGGAGGACTCGGAGACCGGAGGTTGAGGCCTCACAACCACAGCCACCACCAGGAACCGTTGAAGTGCCCTCGCTGTGATTCGCTTAACACCAAGTTTTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGAATTGTCGCCGGTACTGGACAAGCGGCGGCGTTCTCCGTAACGTCCCCGTCGGCGGCGGTTGTCGCAAATCCAAATCCAAGCGCTCTAAGAAAATCAGCAGCAACTGTTCTTCTTCCTCTTTGGAAATTTCACCGGAAATAACAACAACGCCGCCGCAACCGGAGTTTCCGGAGGGGAATTTGAATAATTTGAATAATTCGAACTCGAACTGTAGCAGCGAAAGCTCCAGCCTCACCGCCACCACGGAGGCGGTGTCTCCGGCGACGTCGAACGCTGCGTTGAGCAACAAAAACGTGATTCTAGACGAGAACGGGAGTAACCCTAACTTCAACGGTGGCGGTGGCTATTACGGTGGTTTCTCTGACGTAGGAACGTTCACGAGCCTGATGAGTTCAGCGAACGAAACGGTGTCGTTTGGTTTTGAAAATAATGTTAACGTTCTCGATACGACGTCGTTTCGTTTCGGTAGTGATGGTGGTGGTGGTGAGTGGATGCAGCAGCAGAAAGTTATGGGAATTGGAAGCGGTGCATCTGAGCCGTTGATGCTGGATCAGACGGTTCCGGTTGAGTTGTCGTCGCTGCAGAATGGGAAAGTTAGCAACGGAGAATGTGGACCGTTGGATTGTGATCATGGTTTGTTTGATCTTACTAGCGCCGTTGATCAGGCTTACTGGTCCCACACTTATTGGTCTGATCAAGACCCTAATCTTAATCTCTTTCCCTGA 918 0.5174 MQDSPSSAADCGRFFAGGLGDRRLRPHNHSHHQEPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTSGGVLRNVPVGGGCRKSKSKRSKKISSNCSSSSLEISPEITTTPPQPEFPEGNLNNLNNSNSNCSSESSSLTATTEAVSPATSNAALSNKNVILDENGSNPNFNGGGGYYGGFSDVGTFTSLMSSANETVSFGFENNVNVLDTTSFRFGSDGGGGEWMQQQKVMGIGSGASEPLMLDQTVPVELSSLQNGKVSNGECGPLDCDHGLFDLTSAVDQAYWSHTYWSDQDPNLNLFP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00028 305 MobiDBLite consensus disorder prediction 95 148 - -
Stsc60419g00028 305 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Stsc60419g00028 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 191 IPR045174 GO:0003700|GO:0006355
Stsc60419g00028 305 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
Stsc60419g00028 305 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Stsc60419g00028 305 MobiDBLite consensus disorder prediction 81 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00028 Stsc-Chr60419 140696 141980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00028 21 298 C2C2-Dof Transcription Factor Family AT5G60850 39.041 8.23e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60419g00028 zf-Dof 4.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00028 - - gmx:778116 256.144