Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00012 ATGGAATTAAGTGGCACCATTGATATAGATGCCCTTTCCGAGTTGTCCATTTTGAACAGCTTTAGTGTGATTAACAACAACTTTGAGGGTCCAATGCCGGAGTTCAAGAAGCTTGAGAGGCTAAGAGGATTGTTTCTTTCTAGGAACAAATTCTCCGGCGAGATTCGCGACGATGCTTTCGACGGAATGCGGAGGCTGAAGAGGGTGTTCTTGGCGGAAAATGATTTTAGTGGACATATTCCTAGCTCTCTTGCTCAATTGCCAAGGCTTTTGGATGTGGACTTGCATGATAATAGATTTGATGGTAACATACCTGGATTTCAGAATAGTAGTGATTTTAGGGTTTTTGATTTATCAAACAATCAATTGGAGGGTCCAATTCCGGAAAGCTTGAGCAATCTGGATCCAAGTGCATTTGCTGGTAACAAAGAACTATGTGGAAAACCTCTAAATAATCCTTGCAGCACCAATGACCAACCCACCCCACAAAATGATAAAAAATCTAACAAACATCGCACACTTATCATTGTAATTGTCATAGTTGTAATTGTGGTTATTATCTTAGCCTTAATCATAGTATTCTTTCTAGTTCGGAACCGCAAAAGAAAAGCCAAAAGCCCTAATCCTATAGAGGCAGTTGCATCTAAACCTCAAAGTAGCATTGCGGTTTCAAGTGAGGAGGCCAAGACATCCATGGAGGCTAGGGCATCCATGGAGCCAAGCATATCAATTGAAACCAAATCTATTGATGTGGCTGCGGTTGAAGTTGAGACTGCGACGACAACTGTGTTACCCATTCAAAATGTTGAAGACGGCGGAGGTGGAGGTGGAGGAGGAGACTTTAACTTTGTTAGGGAAGATAGAGTGGTTTTTGATTTGCAGTACCTCCTAAGGGCCTCGGCCGAGGTCCTTGGTAGTGGAAGCTTCGGATCAACCTACAAAGCTTTGGTTACGAGTGGTCAAGTTGTGGTGGTGAAGAGGTTTAAGAACATGAACAAGCTCGGGAAACAAGAATTCTTTGAGCACATGAGAAGGCTTGGGAGGTTGACACACCCTAATGTGCTTCCTCTTGTTGCATTCTACTATGGGAAAGAGGAGAAGCTCTTGGTCTATGACTTTGCTCAAAATGGTAGCTTGGCTAGTCATCTTCATGGTAAACGAAACATAGGGCTAGATTGGTCAACTCGTTTAAAGATCATAAAAGGAGTAGCAAGAGGCTTAGCATACTTATATAGAGAATTCCCGGACCAAAAACTACCCCATGGACATCTCAAATCCTCCAATGTTTTGTTAGACTATACATACAAGCCTCTTTTAACAGAATATCAACTCGTACCAACAATAAACAAAAGTCATGCCCAACAATTCATGGCGGCGTTTAAGTCTCCCGAAGCAAGCCAGCACGATAATCCTGGTCACAAGACTGACGTGTGGTGCCTTGGGATCCTTATATTGGAGTTGCTGACTGGAAAGTTTCCTGCAGATTACGCGAGGCACGGAAAAGGTGCTAGCGAGGAGCTAGAGACATGGGTGAAGTCTATTGCGAGTGGAGAGGTGCTTGATAAGGACATGGTAGGAGGGAGCAATTGTCAAGGAGAGATGTTGAAGATGTTGAGGATTGGAATGGGGTGTTGTGAGTGGGATGAAGGGAGTAGGTTGGATTGGAATGAAGCTGTAGCCATGATTGAAGAGTGCAGAGCAAACGAAGCCGTCACCGAGCTCGTGTGTTTGACGCCGCCGTCGTGTGAGCCACGTCATCGTCGCCCCCTTGTCGCGGTCACCGTTCCCCCATCCTTTGAAGCCGTTGCTCTCCCCAGTCTCGAGATGGTAGATACAAAATATATCGGTTTGTTCATACATTATAGTTTGGTCATACATCATAGAGGAAGATTTGAGAAGGATTCAGATGGGATATTTGCTTATATTGAAGGGGAAACAACTATTGTAGATTGA 1953 0.4409 MELSGTIDIDALSELSILNSFSVINNNFEGPMPEFKKLERLRGLFLSRNKFSGEIRDDAFDGMRRLKRVFLAENDFSGHIPSSLAQLPRLLDVDLHDNRFDGNIPGFQNSSDFRVFDLSNNQLEGPIPESLSNLDPSAFAGNKELCGKPLNNPCSTNDQPTPQNDKKSNKHRTLIIVIVIVVIVVIILALIIVFFLVRNRKRKAKSPNPIEAVASKPQSSIAVSSEEAKTSMEARASMEPSISIETKSIDVAAVEVETATTTVLPIQNVEDGGGGGGGGDFNFVREDRVVFDLQYLLRASAEVLGSGSFGSTYKALVTSGQVVVVKRFKNMNKLGKQEFFEHMRRLGRLTHPNVLPLVAFYYGKEEKLLVYDFAQNGSLASHLHGKRNIGLDWSTRLKIIKGVARGLAYLYREFPDQKLPHGHLKSSNVLLDYTYKPLLTEYQLVPTINKSHAQQFMAAFKSPEASQHDNPGHKTDVWCLGILILELLTGKFPADYARHGKGASEELETWVKSIASGEVLDKDMVGGSNCQGEMLKMLRIGMGCCEWDEGSRLDWNEAVAMIEECRANEAVTELVCLTPPSCEPRHRRPLVAVTVPPSFEAVALPSLEMVDTKYIGLFIHYSLVIHHRGRFEKDSDGIFAYIEGETTIVD 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00012 650 SUPERFAMILY Protein kinase-like (PK-like) 302 579 IPR011009 -
Stsc60419g00012 650 ProSiteProfiles Protein kinase domain profile. 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60419g00012 650 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Stsc60419g00012 650 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Stsc60419g00012 650 Gene3D Transferase(Phosphotransferase) domain 1 374 576 - -
Stsc60419g00012 650 Pfam Protein kinase domain 301 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60419g00012 650 Gene3D Phosphorylase Kinase; domain 1 282 373 - -
Stsc60419g00012 650 Pfam Leucine rich repeat 40 100 IPR001611 GO:0005515
Stsc60419g00012 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 567 IPR046959 -
Stsc60419g00012 650 SUPERFAMILY L domain-like 5 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00012 Stsc-Chr60419 60689 65829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00012 1 570 Receptor kinase-like Gene Family AT5G35390 47.931 1.51e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc60419g00012 Pkinase 3.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00012 - - ahf:112718333 924.465