Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00008 ATGTGGTTGCCAAGGAGTCAAGAGAAGGATGGAGTGAATGGATTAGTAGCGGTCGCAATCGACAAAGAAAAAGGGAGCAGGAATGCACTCCAATGGGCCATTGATCACCTCCTCAACAAAGGTGCTACTGTGATTCTCATCCATGTCAAGATTAACTCTAATTCCGTGCCTGCTTTCGGCCCAAAGACATTCACTGGATTCATCACTGGTAGAGAATATACTATTGGCAGAGAACCTGATGGCCAAAACAAAAACATTTTCCTCTCATATCGCGTCTTCTGTACAAAGAAAGATATACAATGCAAGGATGTCCTAATAGAAGATGTAGATGTTTCCAGAGCGATAATCGACTATGCTACTCAAGCAGGAATCGAGCATTTGGTTCTTGGTTCTTCATCCAAAACCGGTTTGCTCAAAAGATTCAAGGTATCTGATATCCCAGGATCAGTAACGAAAGGTGCACCGGATTTCTGTACAGTCTATGTTGTTGCCAAAGGAAAGATTCAATCGATGCGATCTGCTTCCCGTCCTGTTCCAGCATCAGTTGTTCAGCATAGTTTAGAACAAGCAAACCCACAACAAGTGATGATGCCTCCAGGTTGGAGAGAGCCTGAAAAGTTTTCGTATGAGGGAACGCCACCTAGATCACTGGAGGGAATAACAGAATTCCGGTCCCCATTCACTAGGAAAGGATATCATGATAGGTACACAGAACCTGCAATGGATCTTGACATATCCTTTGTTAGTAGTCGGCCAAGCTCAGAGCGCATGGTCCCCTCGTCTTACCACACCGCAGAAACAACATTTTCCTACTCCAACCCTCGGCTTTCACATACCTCGGATCCAGATATGAACTATAGCTTTGAGTCTGCATATCCAGCAAGGAGGTCTTTGGATGCTGGCCTTTCTGCTGAATTCCCATCTATCATCTCAATGGAGAATATTTCCCCTTCGACATCAGCAGTTGCGGATGATATAGAAGCTGAAATGAGGAGATTGAGGTTGGAGCTCAAGCAAACAATGGAAATGTACAACACAGCGTGTAAAGAAGCATTAACAGCACAACAGAAGGCTGTAGAACTTCAGCGTTGGAAGCTGGAGGAAGAGAAGAAATTGGAAGAGGCAAGGCTTGCCGAGGAAGCAGCCTTGGCGATAGCAGAAAATGAGAAGGCCAGGTCTAGAGCAGCCCTTGAGGCTGCTGAAGCACAAAAGAGGATAGCAGAATTGGAAGCACAAAAGAGACTAAATGCAGAAATGAAAGCACTTAAAGAAGCAGAAGAGAAGAAAAAAGCAATTGATGCTTTATCAAATTTGGATATTAGGTACCGGAGGTATTCGATCGAGGAGATTGAAGCTGCAACAGATTTTTTCAAGGATTCACTGAAGATTGGAGAAGGTGGTTATGGTCCAGTTTATAAGTGCTTTTTGGACCACACGTCGGTAGCAGTGAAGGTTCTACGTCCCGATGCTGCGCAAGGAAGGGAACAATTTCAAAGAGAGGTTGAGATACTAAGCTGCATACGGCATCCGAACATGGTTCTCCTCTTAGGGGCCTGTCCAGAATATGGTTGCCTTGTGTATGAGTACTTGTCTCAAGGAAGCTTGGAAGATCGCCTCTATCGTCGTGGCAACACTCCCTCGCTTTCGTGGCGGATCAGGTTCAAAATTGCTGCTGAGATTGGCACTGGCTTGTTATTTCTTCACCAGACAAAGCCAGAGCCTTTAGTCCACAGGGACTTGAAACCAGCCAACATCTTACTCAACAGCAACTTTGTGGCCAAAATCAGTGATGTTGGTTTGGCTAGGTTAGTCCCTCCATCCGTGGCCGACAGCGTGACACAATATCACATGACATCCGCGGCCGGAACTTTCTGCTACATCGACCCTGAGTACCAGCAGACAGGAATGCTTGGAGTGAAATCAGATATATACTCTCTTGGAGTCATTTTTTTGCAGATTTTGACAGCAAGACCACCAATGGGTTTGGCTCATAGTGTTGAAAGATCCATTGAGAAGGGGACGTTCGCGCAGATGCTTGACCCAACGGTGCTTGACTGGCCACTAGAGGAGGCCTTGAGCTTTGCAAAGTTGGCAATTCAGTGTGCCGAGCTGCGGAGGAAAGACAGGCCGGACCTGGCCAAGGAAATCTTGCCAGAACTGAACAAGCTAAGAGACTTTGCTTATAAGGACAATCCATATTTCGCGGTTGGTAACTCGATCGACTCACCTTCCGAGAGCCAAGTTTCTCTAGAGATGGGTTCAGGTCCCTCTAGTTAA 2277 0.4607 MWLPRSQEKDGVNGLVAVAIDKEKGSRNALQWAIDHLLNKGATVILIHVKINSNSVPAFGPKTFTGFITGREYTIGREPDGQNKNIFLSYRVFCTKKDIQCKDVLIEDVDVSRAIIDYATQAGIEHLVLGSSSKTGLLKRFKVSDIPGSVTKGAPDFCTVYVVAKGKIQSMRSASRPVPASVVQHSLEQANPQQVMMPPGWREPEKFSYEGTPPRSLEGITEFRSPFTRKGYHDRYTEPAMDLDISFVSSRPSSERMVPSSYHTAETTFSYSNPRLSHTSDPDMNYSFESAYPARRSLDAGLSAEFPSIISMENISPSTSAVADDIEAEMRRLRLELKQTMEMYNTACKEALTAQQKAVELQRWKLEEEKKLEEARLAEEAALAIAENEKARSRAALEAAEAQKRIAELEAQKRLNAEMKALKEAEEKKKAIDALSNLDIRYRRYSIEEIEAATDFFKDSLKIGEGGYGPVYKCFLDHTSVAVKVLRPDAAQGREQFQREVEILSCIRHPNMVLLLGACPEYGCLVYEYLSQGSLEDRLYRRGNTPSLSWRIRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLNSNFVAKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGVIFLQILTARPPMGLAHSVERSIEKGTFAQMLDPTVLDWPLEEALSFAKLAIQCAELRRKDRPDLAKEILPELNKLRDFAYKDNPYFAVGNSIDSPSESQVSLEMGSGPSS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00008 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Stsc60419g00008 758 PANTHER OS02G0152300 PROTEIN 16 731 - -
Stsc60419g00008 758 Gene3D Transferase(Phosphotransferase) domain 1 530 733 - -
Stsc60419g00008 758 Coils Coil 323 343 - -
Stsc60419g00008 758 Gene3D Phosphorylase Kinase; domain 1 436 529 - -
Stsc60419g00008 758 SMART serkin_6 457 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60419g00008 758 Gene3D HUPs 16 164 IPR014729 -
Stsc60419g00008 758 Pfam Protein kinase domain 459 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60419g00008 758 SUPERFAMILY Protein kinase-like (PK-like) 438 712 IPR011009 -
Stsc60419g00008 758 ProSiteProfiles Protein kinase domain profile. 457 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60419g00008 758 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 429 529 - -
Stsc60419g00008 758 Coils Coil 349 435 - -
Stsc60419g00008 758 Pfam Universal stress protein family 16 141 IPR006016 -
Stsc60419g00008 758 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 147 - -
Stsc60419g00008 758 CDD STK_N 15 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00008 Stsc-Chr60419 47900 51399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00008 1 750 Receptor kinase-like Gene Family AT1G78940 53.935 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc60419g00008 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00008 - - gmx:100803867 961.444