Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60419g00003 ATGTGGTTCAAAGCTCCGGAATCTTGCAACTGTATAGAGCCGCAATGGCCAGCTGATGAATTATTGGTAAAATATCAATACATCTCAGATTTCTTCATCGCACTCGCCTACTTCTCAATCCCTCTCGAACTCATCTACTTCGTTAAGAAATCGGCGGTTTTTCCCTACAGATGGGTTCTCGTACAGTTCGGTGCCTTCATTGTTCTCTGCGGAGCTACGCACCTTATTAACCTGTGGACCTTCACGATTCACACCAGAACCGTCGCTATCGTCATGACCGCCGCTAAGGTTCTAACCGCCGTCGTTTCTTGCATTACCGCGCTTATGCTTGTACATATTATTCCTGATTTGCTTAGCGTTAAAACCAGAGAGCTGTTCTTGAAGAACAAGGCAGCTGAACTTGATAGGGAAATGGGATTGATTCGTACTCAGGAAGAAACTGGAAGGCATGTTAGGATGTTAACTCATGAAATTAGAAGCACTTTGGATAGGCACACGATCTTGAAGACTACGCTTATAGAGTTGGGAAGAACTTTGGCTCTTGAGGAGTGTGCGTTATGGATGCCAACGAGGACGGGGTTGGAGCTTCAATTGGCTTATACTTTGCGGCAGCAGAATCCGGTTGGGTATACTGTGCCAATTCATCTTCCTGTGATTAACCAAGTGTTTAGTAGCAACAGGGCAGTGAAGATTTCGCCGAATTGCCCGGTCGCGAGGTTAAGGCCTCATACCGGGAAATACATGCCAGGAGAGGTGGTTGCGGTGAGGGTGCCTTTGCTGAATTTGTCTAATTTTCAAATATATGATTGGCCGGAGGTTTCGACGAGAAGCTATGCTTTGATGGTGTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTACATGAGCTAGAGTTGGTTGAGGTGGTTGCTGATCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAATCAATGAGGGCAAGGAATATGCTGATGGAGCAGAATGTTGCACTTGATCTAGCAAGAAGAGAAGCTGAAACTGCAATCCATGCGCGCAATGATTTTTTGGCAGTTATGAATCATGAGATGAGAACTCCCATGCATGCGATTATTGCACTCTCTTCGTTGTTACAGGAAACAGAGTTGACAGCTGAGCAACGTCTGATGGTAGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACTCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGTAGTCTTCAACTTGAAACAACAACATTTAGCCTTCATTCTGTTTTTAGAGAGGTCCTTAGCTTGATTAAGCCCGTCGCATCTGTCAAAAAATTGTCTCTCACTTTACATCTAGCTTCAGATTTGCCAGCGTACGCGGTTGGCGACGACAAACGTCTGATGCAAACTATTCTTAATGTTGTTGGTAATGCTGTGAAGTTCTCAAAAGAGGGCAGCATTTCCATCTCTGCCATTGTTGCAAAGCCTGAATCCTTCAAGGATGCTAGAATTCCTGAGTTTCATCCGGTGTCAAGTGACAATCATTTTTATTTGCGAGTGCAGGTAAAAGATTCAGGATCAGGAATTCACCCACAAGATATTCCAAAGTTATTCACCAAGTTTGCACAAAGCCAAGCAGTTACAACAAAAGGTCCTGCTGGAAGTGGACTTGGCCTTGCCATTTGTAGGAGGTTTGTAAATCTCATGGAAGGGCATATTTGGATCGAAAGCGAAGGTATTGGAAAAGGATGTACAGTCACTTTCTTTGTGAAACTTGGAATCCCCGACCGATCAAATGAATCTAAATTGGCGTTTGCCCCTAAAGTTATGGGAAATCATGTAACTACAAACTTTGGAGGGCTCAAGGTGCTTGTCATGGATGATAATGGAGTTAACAGGTCAGTAACAAAGGGATTACTACTACATTTAGGATGTGACGTTACAGCAGCAGGCTCAAGTGAAGAGTGTCTGCGCATCATTTCGCCGGAACACAGAGTGGTATTCATGGACGTGTGTACAGGGTTAGATGGATATGAACTAGCTATACGAATACAGGAGAAGTTTAAGAAACGCCAAGATAGGCCTCTAATAGTTGCTCTTACTGGGAACACAAACAAGGTGACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATACTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCTGAACTTCTTGAGCACAGAGTTCTGTTTGAAGCGATTTAA 2238 0.4366 MWFKAPESCNCIEPQWPADELLVKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTAAKVLTAVVSCITALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLIELGRTLALEECALWMPTRTGLELQLAYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPHTGKYMPGEVVAVRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARNMLMEQNVALDLARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLETTTFSLHSVFREVLSLIKPVASVKKLSLTLHLASDLPAYAVGDDKRLMQTILNVVGNAVKFSKEGSISISAIVAKPESFKDARIPEFHPVSSDNHFYLRVQVKDSGSGIHPQDIPKLFTKFAQSQAVTTKGPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTVTFFVKLGIPDRSNESKLAFAPKVMGNHVTTNFGGLKVLVMDDNGVNRSVTKGLLLHLGCDVTAAGSSEECLRIISPEHRVVFMDVCTGLDGYELAIRIQEKFKKRQDRPLIVALTGNTNKVTKENCMRVGMDGLILKPVSVDKMRGVLSELLEHRVLFEAI 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60419g00003 745 PIRSF Ethylen_sen_hybr_HK 3 743 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Stsc60419g00003 745 FunFam Ethylene receptor 1 315 411 - -
Stsc60419g00003 745 Pfam GAF domain 163 312 IPR003018 GO:0005515
Stsc60419g00003 745 FunFam Ethylene response sensor 141 313 - -
Stsc60419g00003 745 SUPERFAMILY CheY-like 615 737 IPR011006 -
Stsc60419g00003 745 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 591 IPR003594 -
Stsc60419g00003 745 Pfam Response regulator receiver domain 621 729 IPR001789 GO:0000160
Stsc60419g00003 745 Gene3D - 613 745 - -
Stsc60419g00003 745 Pfam His Kinase A (phospho-acceptor) domain 349 413 IPR003661 GO:0000155|GO:0007165
Stsc60419g00003 745 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 7 738 - -
Stsc60419g00003 745 SMART HisKA_10 348 413 IPR003661 GO:0000155|GO:0007165
Stsc60419g00003 745 CDD HisKA 346 409 IPR003661 GO:0000155|GO:0007165
Stsc60419g00003 745 SMART gaf_1 163 322 IPR003018 GO:0005515
Stsc60419g00003 745 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 402 590 IPR036890 -
Stsc60419g00003 745 ProSiteProfiles Histidine kinase domain profile. 355 592 IPR005467 -
Stsc60419g00003 745 PRINTS Bacterial sensor protein C-terminal signature 534 544 IPR004358 GO:0016310|GO:0016772
Stsc60419g00003 745 PRINTS Bacterial sensor protein C-terminal signature 516 530 IPR004358 GO:0016310|GO:0016772
Stsc60419g00003 745 PRINTS Bacterial sensor protein C-terminal signature 551 569 IPR004358 GO:0016310|GO:0016772
Stsc60419g00003 745 SUPERFAMILY GAF domain-like 166 315 - -
Stsc60419g00003 745 Gene3D - 413 597 IPR036890 -
Stsc60419g00003 745 Gene3D - 141 313 IPR029016 -
Stsc60419g00003 745 SMART HKATPase_4 460 592 IPR003594 -
Stsc60419g00003 745 Gene3D - 314 412 - -
Stsc60419g00003 745 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 334 414 IPR036097 GO:0000155|GO:0007165
Stsc60419g00003 745 FunFam Ethylene receptor 1 413 595 - -
Stsc60419g00003 745 ProSiteProfiles Response regulatory domain profile. 620 736 IPR001789 GO:0000160
Stsc60419g00003 745 CDD REC_ETR-like 619 732 - -
Stsc60419g00003 745 SMART REC_2 619 732 IPR001789 GO:0000160
Stsc60419g00003 745 FunFam Ethylene receptor 613 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60419g00003 Stsc-Chr60419 7996 12504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60419g00003 7 745 Miscellaneous Gene Families AT1G66340 80.027 0.0 1219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60419g00003 GAF 3e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60419g00003 K14509 - gmx:100795799 1316.6