Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60418g00047 ATGGAGGAGAGAAACAATAACAATAATAACGATGGTGAGAAAGTTGGAGATGAAGTAATGCTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGGTTTTACCTGAGGAGAAAGATTCAGCAAAGACCACTGTCCATTGAGCTCATCAAGCAACTTGATATCTATAAATACGATCCTTGGGATCTTCCAAAGTTGGCAAGCACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGGCCAAATAGAGTTACTGGTGCTGGGTTCTGGAAAGCCACTGGGACTGATAGGCCTATATACTCATCATCTTCATCATCAGAAGGTTCTTCTAATTCTTCTTCTTCTTCAAAGTGTATTATTGGACTGAAGAAATCACTTGTGTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAGACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCACTCTTCTTCTTCTTCATTGCTTTCACAAAACAAGTACTTGGACAACACCGTTATTCCACCCAATGAATCATGGACAATATGCAGGATCTTCAAGAAAACAAACTCAACAGCACAAAGAGCTCTCTCTCAATCTTGGGTTTCTTCTATATTACCTACTGCTGAACCAACCACCCCTGATCATAATAATAACAATAATATTCAAACCAAAGATAACAATCCTCAAGAAATTATTAACACCCAATTTTGCTCATCAACCACCAACAATATTATTCCACTAACCAAAAATCCTAATTGCTGCTTACATGTTAGTAATCATTTCTGTCCTTTAGATGTTACTGCTGCTGCCTCATATAAATCCATTATCAACCCTTTGATTTATTACAAAGCACTTGATCATTTTTACCTACCCTTTTCATCATCAAATGGTGGAGACCATAATAATAGTAGTGATAGCTTCATATTCTCATCCTCTGATAATGATTCATCAACAACTAATACAAATTTTGGTGGGTTGTCACAAATAGGGATACACCAATTTTATGATGATGCTAATAATGATGCAATGGTGAAATTAAATAATAATAATTTAAATGTGAATAATAATAATAATGTGCATGGTGGTGTTGATGAGCAAGATTTGGAGACATTGAGATCCTTTGGTTTTCCATTCGGTGTGCCATTGAATATTGCTGGGGATGCATGGAAGTCAAATTATAATAATGTGCATTGGGATGCTTCTTCTTGCCCTAGTTATTCCACAACCAAGTGCTACACCTAA 1263 0.3721 MEERNNNNNNDGEKVGDEVMLPGFRFHPTDEELVGFYLRRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSSSSSEGSSNSSSSSKCIIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSHSSSSSLLSQNKYLDNTVIPPNESWTICRIFKKTNSTAQRALSQSWVSSILPTAEPTTPDHNNNNNIQTKDNNPQEIINTQFCSSTTNNIIPLTKNPNCCLHVSNHFCPLDVTAAASYKSIINPLIYYKALDHFYLPFSSSNGGDHNNSSDSFIFSSSDNDSSTTNTNFGGLSQIGIHQFYDDANNDAMVKLNNNNLNVNNNNNVHGGVDEQDLETLRSFGFPFGVPLNIAGDAWKSNYNNVHWDASSCPSYSTTKCYT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60418g00047 420 Gene3D NAC domain 29 199 IPR036093 GO:0003677|GO:0006355
Stsc60418g00047 420 Pfam No apical meristem (NAM) protein 22 159 IPR003441 GO:0003677|GO:0006355
Stsc60418g00047 420 ProSiteProfiles NAC domain profile. 20 194 IPR003441 GO:0003677|GO:0006355
Stsc60418g00047 420 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 289 - -
Stsc60418g00047 420 FunFam NAC domain-containing protein 35 29 197 - -
Stsc60418g00047 420 SUPERFAMILY NAC domain 17 194 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60418g00047 Stsc-Chr60418 379563 381997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60418g00047 7 213 NAC Transcription Factor Family AT1G26870 71.498 6.36e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60418g00047 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60418g00047 - - gmx:100783995 385.571