Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60418g00032 ATGGACTTAACCCCAATTGATGCAACCACCACCCAAACCCAAACCTTACACACAAACTCACAAACCCCACCACCACCTCCCACAACAAACGGTTCCCTCAAACCCCACAACCCCCTCCCGCCCGCCGCTGTCGCCACCGCAGCACCACCACCACCACCACCACCTCTCTCCATGGTAATTTCCTACAAAGAGTGCCTCAAGAATCATGCAGCCACCATCGGAGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCTCCTCCTCCTCCAACCCCTCCGAGCCACGCTCCCTCACGTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGCGACCAAGAATCCCTCCACCACCACCACAACCACCCAAATTTCCTCAGCTTCTACCCCCAGCGTGGACTCAGCCTTAGCACAAGCCCAAGCACCACAAGCCCAAGCCCATCAGCAAGCCCAATTTCAAGCCCGTCATCACCACCGCCGCCCGCACCCGCCCCTCTCTCTCACCACTTCCCCCCTCCTCCTCCTTACTCCTCCTTCCACCACCACAACATGAATTCTCCGGCCACCGTTGCTCCGACGAGCATGCTCGTATCCCTTGGAAATGCGGCGTGTTCTTCCGGTGGTGGTGGATTCAATAACCATCAGCATAATCAAGACTTGAACAGCTCGAAGAAGAGGCATAGGACGAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCTGAGATTCTCAGAGAAGATTGGTTGGAGAATGCAGAGAGATGAAGATGCTTTGATTCAAGATTTTTGCAACCAAATTGGGGTTTCTAGAGGTGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTCTTCATCAGAAATAGGAACAACAACGATGCTTCTAATTCTGCTCCTCCTCAAAAGAATGGTAATCTTAATGCTCTTGATAATCATAATGATGATGATCATCATGATCATAATAATAGTGGAAATGGTAATGGTAATCAACACAGCAACAACACTAGTAGCAGCAACGATGACATTCACAGAGATTAA 1038 0.5193 MDLTPIDATTTQTQTLHTNSQTPPPPPTTNGSLKPHNPLPPAAVATAAPPPPPPPLSMVISYKECLKNHAATIGGHALDGCGEFMPSSSSNPSEPRSLTCAACGCHRNFHRRDQESLHHHHNHPNFLSFYPQRGLSLSTSPSTTSPSPSASPISSPSSPPPPAPAPLSHHFPPPPPYSSFHHHNMNSPATVAPTSMLVSLGNAACSSGGGGFNNHQHNQDLNSSKKRHRTKFSKEQKEKMLRFSEKIGWRMQRDEDALIQDFCNQIGVSRGVFKVWMHNNKNTFFIRNRNNNDASNSAPPQKNGNLNALDNHNDDDHHDHNNSGNGNGNQHSNNTSSSNDDIHRD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 323 337 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 1 52 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 132 184 - -
Stsc60418g00032 345 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Stsc60418g00032 345 NCBIfam homeobox domain, ZF-HD class 225 282 IPR006455 -
Stsc60418g00032 345 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 283 - -
Stsc60418g00032 345 ProSitePatterns Zinc finger C2H2 type domain signature. 100 123 IPR013087 -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 1 19 - -
Stsc60418g00032 345 Pfam ZF-HD protein dimerisation region 60 114 IPR006456 -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 132 151 - -
Stsc60418g00032 345 SUPERFAMILY Homeodomain-like 216 283 IPR009057 -
Stsc60418g00032 345 Gene3D - 210 284 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 209 238 - -
Stsc60418g00032 345 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 287 308 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 152 179 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 287 345 - -
Stsc60418g00032 345 MobiDBLite consensus disorder prediction 20 34 - -
Stsc60418g00032 345 FunFam Zinc-finger homeodomain protein 2 212 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60418g00032 Stsc-Chr60418 302583 303620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60418g00032 58 298 ZF-HD Transcription Factor Family AT2G02540 38.258 2.74e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc60418g00032 ZF-HD_dimer 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60418g00032 - - aip:107641865 384.8