Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60418g00028 | ATGAGCGATCACTTGGTGCTCTTCGTCGACCGTCTCGGGCGCCCCACCGATCCCGTCGCGCAGCCGGCGCAACTCCCAGCTGATCCCTCGCCGATGCCGGAGGAAGGGGTCGCCGGGCCATCTGGATCCGCTCCGGAAGCGGATCGCGACGTTGAGTTGGAACGCGGCGGCGATGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACGGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTCAAGTATGCACACAGGAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGCCATCAGCCTTATCAACCTGGTTATACTGCTCCACCACCACGCCCTCAGCCTGAAGAAGCTACTATTGACATAGGTGGAGGCTGGACAATATCTGGCACGCCGTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCCGAACGTCAATTTCTGGATGCTGAATATGATGAATATGCTGCTTCCAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTTTAATTTTAATGGCCCTTTTACTGTTACGGCATGCACTTTCTGTTACTGATGGCGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATTAGTATTCTGCAACGTCGGCGACAAAGACAGGAAGCTGCAGCACTAGCTGCAACTCAAGTAGCCTTCGTTCTACAGTCTGGGCAGCACAGGGGGCTACAATTTGCCATAGCCCCAGGACCACCACCCACAGTACAGCAGGAACAAGTGTAG | 870 | 0.5391 | MSDHLVLFVDRLGRPTDPVAQPAQLPADPSPMPEEGVAGPSGSAPEADRDVELERGGDDEEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEEATIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV | 289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60418g00028 | 289 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 125 | IPR013083 | - | |
| Stsc60418g00028 | 289 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 250 | IPR033275 | - | |
| Stsc60418g00028 | 289 | SUPERFAMILY | RING/U-box | 68 | 120 | - | - | |
| Stsc60418g00028 | 289 | Coils | Coil | 158 | 178 | - | - | |
| Stsc60418g00028 | 289 | CDD | RING_CH-C4HC3_MARCH | 70 | 116 | - | - | |
| Stsc60418g00028 | 289 | SMART | ringv_2 | 69 | 116 | IPR011016 | GO:0008270 | |
| Stsc60418g00028 | 289 | Pfam | Protein of unknown function (DUF3675) | 121 | 240 | IPR022143 | - | |
| Stsc60418g00028 | 289 | FunFam | RING/FYVE/PHD zinc finger protein | 58 | 126 | - | - | |
| Stsc60418g00028 | 289 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Stsc60418g00028 | 289 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 62 | 122 | IPR011016 | GO:0008270 | |
| Stsc60418g00028 | 289 | Pfam | RING-variant domain | 70 | 115 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60418g00028 | Stsc-Chr60418 | 247214 | 250142 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60418g00028 | 29 | 119 | C3H Transcription Factor Family | AT2G22120 | 37.234 | 2.18e-08 | 52.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60418g00028 | - | - | gmx:100779674 | 469.544 |