Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60418g00023 ATGAGAGTTGGTGGGAGAAGGGGAGTGAGAGCTGAGCGTGGTAAACACGGTGAAGGCTTTGGCTTTGTCGAAGGAAGGAATAAGGGGGAGAGTGTGAGCGAGTTTGTATCTGGTGTTAGGAGGTTCAACAATGGAGGAGGGAGGAGCGAACATATAGCGTATTTGAAACGACGGGATCACTATATGACGGAGACTTGCACGGTTTTTGTGGATAACCTGCCGACTGAAGTAACTAAGAGAGATCTGTTCAAAGAGTTTGGGAAGGATGGGTACATAGCTGACATATACATCTCCAGAAAGGAAAGACAGAGAGCAAACAGACTTTTTGCGTTTATAAGGTTCAATTCACAAGGAGGAGCTATGAAGTCCATTGAAAGAATGAATGGTAGGAGATGGAGGGAATCACAGCTGTATGTCATTTTATCGAAGTATGATAAGCAACCCATGAATGAAAGAAATAAGCCTAGAGCCATGATCCAGAACCATAAGAAGAAAAGAATGGTGAGAAAATGGATTGCGGTGAAGGATAATCGTCCTAACGATAAGATGGTGATAAATGAGCCCCAGAAGAACACACAAACAAAGACAATTGATGGTGTATGGGCAGAGGATCAGAGAGAAATGCTTCAGAGGAGCTTACTTGGTTGCTTTGTCAAACCCAATGAGTTTAGGAAGGTTATGAACCTTCTTCTCTATGAATGGAGCAGCGAGGGAGATATAGAATGCAGAGATATTGGCCCTTATAGGTGCCTTATAACCTTTTCATCATCAGACATAAGGGATAAAGCGTTCAGTGATCCTTTATTGCTTTCTGTTTTTGATGAAATAAGGCCACACCGGGGTATCTTTTGGAACCTATCCAGGCGTGTGTGGATTGAGATTATGGGATTACCGGTGTGTATGTGGTGTGAAGAGAATATAAATAGAGTGGCTGAACTTTGGGGAAAAGTCGTAGAACATGATGACAGGTCCGGAGACTGGAGCAAGGCCTATAGTGTGCAAGTGCACCCCGACTTGGTGAAGGAATGCTCTGCCTTGATGGAAGAATCAACGTCGACATCTAGGGTGGAAGAGACGCCAATGGGTGTTAAACGACTGCCGACGGTTTCTGGACGCCAGAATTCGAATCGATTTGACGACGATGATCCTCAGTTGGGTGCAATAATCAATGCGAATTACTCGAAGGCGCAACCTTCAATTAATGGAACGAGTGATGGTGAAGGAGTCGAAGAAGCGTGCTGGGGAGTGATGCACCCGGTGAATTAG 1266 0.4479 MRVGGRRGVRAERGKHGEGFGFVEGRNKGESVSEFVSGVRRFNNGGGRSEHIAYLKRRDHYMTETCTVFVDNLPTEVTKRDLFKEFGKDGYIADIYISRKERQRANRLFAFIRFNSQGGAMKSIERMNGRRWRESQLYVILSKYDKQPMNERNKPRAMIQNHKKKRMVRKWIAVKDNRPNDKMVINEPQKNTQTKTIDGVWAEDQREMLQRSLLGCFVKPNEFRKVMNLLLYEWSSEGDIECRDIGPYRCLITFSSSDIRDKAFSDPLLLSVFDEIRPHRGIFWNLSRRVWIEIMGLPVCMWCEENINRVAELWGKVVEHDDRSGDWSKAYSVQVHPDLVKECSALMEESTSTSRVEETPMGVKRLPTVSGRQNSNRFDDDDPQLGAIINANYSKAQPSINGTSDGEGVEEACWGVMHPVN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60418g00023 421 SMART rrm1_1 67 140 IPR000504 GO:0003723
Stsc60418g00023 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Stsc60418g00023 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Stsc60418g00023 421 CDD RRM_SF 68 139 - -
Stsc60418g00023 421 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 65 151 - -
Stsc60418g00023 421 Gene3D - 47 171 IPR012677 -
Stsc60418g00023 421 SUPERFAMILY RNA-binding domain, RBD 63 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60418g00023 Stsc-Chr60418 218564 219945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60418g00023 54 139 Eukaryotic Initiation Factors Gene Family AT1G71770 34.783 3.15e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60418g00023 - K15561 ahf:112794598 160.614