Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60418g00011 ATGGCTTCCGAGCCTGACGTTTCCGAGATTTCCTCTCTTTTCGAAAGATTAGTTAGAAACAGAGACATGACTCTGTTTCTGCCTTTCCTCTTTGGCTTCTCTGATTCTCAATCTCATTCTTCATCGCAAAACGACGAAACGGGAGAAAGGACCACCGATGGTCCCAACCGTGAGAGGATCATACTAGTGAACCCCTTCACGCAAAGCATGGTGGTAATCGACGGTTCTTCAAGCCTCGAAGCTCTGTTTCGCGAGATTGCCGCTAACAACGGTGGTGGCAAAGGCGGAAGACCACCGGCTACGAAGGAATCCATTGAAGCCATGCCGAGCTTCGAAATCAAAGAAGGTGAACTCGTAGGAGGAGAGTGCGTGGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTCCATCCGAATTGCATTGAGAAGTGGCTTGGAATCCATGGAAGTTGTCCTGTTTGCAGGTACGAGATGCCTGTTGAGGAAAAAGATGAAGGAAAGAAGAGAGAGAGTGAAGAAGAACAAGAAGAAAATCAAGAAAGGGGAGACAGAGAGAGGAGAAGAATTGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTCAACAGGGGTATTAGTAGGAGAAATAGCCACGATCAAGATCAAGGTCAAGGTCAAAACCAGGATCAGAATCAAGATTCTTCTTCTGGTGGTGGTGATGATGAACGTAATTCTGATGATTCTGGTAGAGGTGATGTTGAAGCAGAAAATTAG 777 0.4569 MASEPDVSEISSLFERLVRNRDMTLFLPFLFGFSDSQSHSSSQNDETGERTTDGPNRERIILVNPFTQSMVVIDGSSSLEALFREIAANNGGGKGGRPPATKESIEAMPSFEIKEGELVGGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGIHGSCPVCRYEMPVEEKDEGKKRESEEEQEENQERGDRERRRIGNGEVWVSFSFNRGISRRNSHDQDQGQGQNQDQNQDSSSGGGDDERNSDDSGRGDVEAEN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60418g00011 258 ProSiteProfiles Zinc finger RING-type profile. 123 164 IPR001841 -
Stsc60418g00011 258 MobiDBLite consensus disorder prediction 209 258 - -
Stsc60418g00011 258 Pfam Ring finger domain 122 164 IPR001841 -
Stsc60418g00011 258 MobiDBLite consensus disorder prediction 240 258 - -
Stsc60418g00011 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 168 - -
Stsc60418g00011 258 MobiDBLite consensus disorder prediction 210 239 - -
Stsc60418g00011 258 MobiDBLite consensus disorder prediction 36 57 - -
Stsc60418g00011 258 SMART ring_2 123 163 IPR001841 -
Stsc60418g00011 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 171 IPR013083 -
Stsc60418g00011 258 FunFam E3 ubiquitin-protein ligase RNF181 88 170 - -
Stsc60418g00011 258 SUPERFAMILY RING/U-box 111 169 - -
Stsc60418g00011 258 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60418g00011 Stsc-Chr60418 97428 98204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60418g00011 1 224 C3H Transcription Factor Family AT1G26800 49.339 1.24e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60418g00011 - - adu:107489464 303.523