Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00100 ATGGCTACTATTGCTCTCAGGACTTCAACTTCTAAGCGACTCTTCCCTTTCTCTTCTCAAATCTACTCTTCTTGCTGCAGACCCTTTGCCCCTTCTCAATCTCCTCTTTCTCAATCCCCTTTTCCAAATGACAACTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCCTTGGTGGAGATCCATGGCCACCTTCACCAGAACAAAACCACATGTTAACGTCGGAACTATTGGGCACGTTGATCATGGGAAAACTACACTCACCGCAGCAATTACCAAGGTTTTAGCCGACGAAGGGAAGGCTAAGGCTATAGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAACGGCACACGTTGAGTACGAGACCGCTAAACGACACTATGCACATGTTGACTGCCCTGGACATGCTGATTATGTCAAAAATATGATTACAGGAGCTGCACAAATGGATGGTGGAATACTTGTTGTATCAGCTCCCGATGGACCAATGCCCCAAACCAAGGAGCATATTCTTCTTGCTCGCCAAGTCGGTGTGCCTTCTCTTGTGTGCTTTTTGAATAAAGTTGATGCTGTTGATGATCCAGAGCTGTTAGAACTTGTAGAGATGGAGCTCCGCGAGCTTCTAAGCTTCTACAAGTTCCCTGGAGATGAAATCCCCATCATCAGAGGCTCAGCATTGTCTGCTTTACAGGGAACAAATGAAGAAATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGACGAATACATTCCTGACCCAGTTCGCCAGCTTGACAAGCCTTTCCTTATGCCCATTGAAGATGTTTTTTCAATTCAGGGACGAGGAACAGTTGCCACTGGCCGTGTTGAGCAAGGAATCATAAAAGTTGGTGATGAAGTTGAAGTTTTGGGTCTGATGCAGGGTGGTCCCCTTAAAACAACAGTTACTGGAGTTGAGATGTTCAAGAAGATTTTAGATCAAGGACAGGCTGGTGACAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAGGACATTCAACGTGGTCAGGTTATTGCCAAGCCTGGTTCTGTAAAAACATACAAAAAGTTTGAGGCGGAGATATACGTTCTCACAAAAGATGAGGGTGGGCGACACACTGCTTTCTTCTCTAACTACAGACCTCAGTTTTATTTGAGAACTGCTGATATTACTGGAAAAGTAGAGTTGCCCGAAAATGTTAAGATGGTTATGCCTGGAGACAATGTTACTGCAGTGTTTGAATTGATTTCAGCTGTTCCACTTGAACCAGGACAAAGATTTGCCTTGAGAGAAGGAGGCAGAACAGTTGGTGCAGGTGTTGTGTCAAAAGTACTGACCTAA 1386 0.4401 MATIALRTSTSKRLFPFSSQIYSSCCRPFAPSQSPLSQSPFPNDNSSSSSSSSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISAVPLEPGQRFALREGGRTVGAGVVSKVLT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00100 461 Pfam Elongation factor Tu GTP binding domain 73 266 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 Pfam Elongation factor Tu C-terminal domain 365 459 IPR004160 -
Stsc60417g00100 461 MobiDBLite consensus disorder prediction 31 61 - -
Stsc60417g00100 461 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 73 269 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 NCBIfam elongation factor Tu 65 460 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc60417g00100 461 Gene3D - 65 268 IPR027417 -
Stsc60417g00100 461 PRINTS GTP-binding elongation factor signature 77 90 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 PRINTS GTP-binding elongation factor signature 157 168 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 PRINTS GTP-binding elongation factor signature 121 129 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 PRINTS GTP-binding elongation factor signature 141 151 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 PRINTS GTP-binding elongation factor signature 194 203 IPR000795 GO:0003924|GO:0005525
Stsc60417g00100 461 Hamap Elongation factor Tu [tuf]. 64 461 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc60417g00100 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 291 IPR027417 -
Stsc60417g00100 461 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 370 460 IPR009001 -
Stsc60417g00100 461 Gene3D Translation factors 405 460 - -
Stsc60417g00100 461 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 114 129 IPR031157 -
Stsc60417g00100 461 FunFam Elongation factor Tu 271 401 - -
Stsc60417g00100 461 Gene3D Translation factors 271 401 - -
Stsc60417g00100 461 PANTHER ELONGATION FACTOR TU-RELATED 68 460 - -
Stsc60417g00100 461 NCBIfam small GTP-binding protein domain 76 212 IPR005225 GO:0005525
Stsc60417g00100 461 CDD EF_Tu 74 268 IPR041709 -
Stsc60417g00100 461 Pfam Elongation factor Tu domain 2 290 360 IPR004161 GO:0005525
Stsc60417g00100 461 SUPERFAMILY Translation proteins 270 366 IPR009000 -
Stsc60417g00100 461 CDD EFTU_II 276 364 IPR033720 -
Stsc60417g00100 461 CDD EFTU_III 367 456 - -
Stsc60417g00100 461 FunFam Elongation factor Tu 64 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00100 Stsc-Chr60417 469108 473193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00100 71 459 Eukaryotic Initiation Factors Gene Family AT5G60390 31.050 1.97e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00100 K02358 - gmx:100791600 799.275