Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00088 ATGAAGAAAGTTGGTGGTGGAAAGGGTGAGATTGGTTTGAGTTCTTCTGGATTGGACTCCATGAGCCAGAGCACTACCTTGATTAGATTCAGCTTCGATGAAATCAAGAGAGCCACCAGGAATTTCTCAAGGGATAACATAATTGGAAGTGGCGGTTATGGCAACGTTTACAGGGGTTTGCTGAATGATGGATCTCAGGTTGCTATGAAGAGGTTCAAGAATTGTTCTGTAGCTGGTGATGCTAGCTTCACACATGAAGTTGAGGTCATTGCCAGTGTTAGGCATGTCAATCTTGTTGCTTTGAGAGGGTATTGTACTGCCACAACTAATTTAGAGGGTCATCAGAGGATTATTGTAACTGATTTGATGGAAAATGGGAGTCTCTATGATCACTTGTTTGGGTCAAGAGGGAAGAAATTGAGTTGGCCTATTCGCCAGAAGATAGCTCTGGGGACTGCTAGGGGTTTGGCTTATCTACATTATGGCGCGCAGCCGTCGATCATTCATAGGGATATTAAGGCTAGCAATATTCTTCTTGATGAGAAATTTGAGGCCAAGGTTGCAGATTTCGGGCTGGCAAAGTTCAATCCGGAGGGAATGACACATATGAGTACTAGAGTTGCAGGTACCATGGGGTATGTTGCACCAGAGTATGCACTCTACGGGCAATTGACAGAGAGGAGTGATGTTTTCAGCTATGGCGTCGTGCTTCTTGAATTGTTGAGTGGGAGAAAGGCCCTGGAGACGGACAGTGATGGACAGCCAAATGCCCTGACTGACTTGGCCTGGTCATTGGTTAGGGATGGTAAATCATTGGATGTTATTGAGGATGGAATGCCGGAACAGGGCTCGCCGGAGGTTCTTGAGAAGTATGTGCTGGTTGCTGTGCTGTGTTCTCATCCTCAGTTGTATGCCAGGCCTACAATGGACCAGGTTGTTAAGATGCTGGAGACCGATGAGTCCGTGCCTTCGGTTATGGAAAGGCCAATCCCTTTTACTGCTGGGAGGATTGATATTGAGAAATCTGCTCTAAGCAACTCAGGGCAGCTTTGTAGTCCAACCGGTTATCAGGCATTCACAATGCAGAGTAAACGCCTTTCGGATCCTAATCAGAAAGAAGAGCTTAAGGAAGAAGAAGAAGAAGAGGGAAACTCTCAGTCTGGAACCATGAGCGTGGATTAA 1182 0.4619 MKKVGGGKGEIGLSSSGLDSMSQSTTLIRFSFDEIKRATRNFSRDNIIGSGGYGNVYRGLLNDGSQVAMKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSRGKKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALETDSDGQPNALTDLAWSLVRDGKSLDVIEDGMPEQGSPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSVMERPIPFTAGRIDIEKSALSNSGQLCSPTGYQAFTMQSKRLSDPNQKEELKEEEEEEGNSQSGTMSVD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00088 393 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Stsc60417g00088 393 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 10 121 - -
Stsc60417g00088 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Stsc60417g00088 393 ProSiteProfiles Protein kinase domain profile. 42 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00088 393 SMART serkin_6 42 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00088 393 Pfam Protein kinase domain 43 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00088 393 CDD STKc_IRAK 48 317 - -
Stsc60417g00088 393 PANTHER OS01G0750732 PROTEIN 14 352 - -
Stsc60417g00088 393 Gene3D Transferase(Phosphotransferase) domain 1 123 327 - -
Stsc60417g00088 393 SUPERFAMILY Protein kinase-like (PK-like) 19 317 IPR011009 -
Stsc60417g00088 393 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Stsc60417g00088 393 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 123 324 - -
Stsc60417g00088 393 MobiDBLite consensus disorder prediction 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00088 Stsc-Chr60417 418494 420780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00088 14 361 Receptor kinase-like Gene Family AT2G48010 76.068 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc60417g00088 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00088 - - gmx:100786298 658.677