Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00087 ATGAAGGACTTATTAGTGGATTCCCCAGTTTGTGTTCTTGAGGATCTCCTAAGGACCTCAGAATCAGAATCAAGCTCTTCTTCTTCTTCTTCTTCTTCCAAAGAGCATGCTTTGGATTCTGAGTCTCATCAAGATAAGGCAAGACATGTTTCTAAGTGGCACACTTTTGTGCAATTGTTGAGGAGCAAGTCAAAGAAGCCTTTGGCCACATTGCATCCTCTTAGTGTCCTCAAGCTCTCAAGAAGAATGAGTGGTAGCATGAGGAAGACTTCTTCACTTGCTACCATGGATTCAGATTCTTCATTATTGCACACCTCACCATGGAAGATCTTCTCTCTCCATGACTTACAAATTGCTACCAAATATTTCAGCCAAGAGAATTTGATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATCATCAGTTAGTAGCAGTTAAACGGCTAACAAGAGGAACAGCTGATGAAACTATAGGTGACTTCTTATCAGAACTTGGAATCATGGCGCATGTAAACCACACCAACACTGCTAAGTTGGTTGGTTATGGTGTGGAAGGTGGAATGCATCTGGTTCTTCAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTGCTTTATGGGTCCAAGGAGAAGCTTCCCTGGTCTATTAGGCAGAGGATTGCATTAGGAACAGCAGAGGGAATATTGTATCTTCATGAGGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGAATATGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGCGTTACAAGATTTGAAGGAACTTTTGGATACCTTGCTCCAGAATACTTACTCCATGGCATAGTAGATGAGAAAACAGATGTATTTGCATTTGGTGTAGTGCTATTAGAATTAGTAACTGGGCGGAGAGCACTTGATTACTCACAACAAAGTCTTGTCTTATGGGCAAAACCTTTGTTGAAGAAGAATAATATTAGGGAGCTGATTGATCCTTCACTAGGAGGTGACTTTGATTATAGAGAGGTTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCGATTCGTCGTCCCTCTATGAGACAGGTACATTGCTTCATTCTCTAG 1170 0.4111 MKDLLVDSPVCVLEDLLRTSESESSSSSSSSSSKEHALDSESHQDKARHVSKWHTFVQLLRSKSKKPLATLHPLSVLKLSRRMSGSMRKTSSLATMDSDSSLLHTSPWKIFSLHDLQIATKYFSQENLIGKGGYAEVYKGCLPNHQLVAVKRLTRGTADETIGDFLSELGIMAHVNHTNTAKLVGYGVEGGMHLVLQLSEKGSLASVLYGSKEKLPWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDEYEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNNIRELIDPSLGGDFDYREVNVMLLAASLCIQQSSIRRPSMRQVHCFIL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00087 389 SUPERFAMILY Protein kinase-like (PK-like) 98 385 IPR011009 -
Stsc60417g00087 389 Pfam Protein kinase domain 124 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00087 389 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
Stsc60417g00087 389 MobiDBLite consensus disorder prediction 18 35 - -
Stsc60417g00087 389 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 389 - -
Stsc60417g00087 389 PANTHER OS08G0249100 PROTEIN 7 387 IPR046958 -
Stsc60417g00087 389 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 93 197 - -
Stsc60417g00087 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Stsc60417g00087 389 Gene3D Transferase(Phosphotransferase) domain 1 200 387 - -
Stsc60417g00087 389 SMART serkin_6 123 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00087 389 ProSiteProfiles Protein kinase domain profile. 123 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00087 389 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Stsc60417g00087 389 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00087 Stsc-Chr60417 413428 415450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00087 110 387 Trihelix Transcription Factor Family AT1G68690 43.945 8.60e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60417g00087 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00087 - - gmx:100780587 577.4