Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00086 ATGAAGGACTTATTAGTGGATTCCCCAGTTTGTGTTCTTGAGGATCTCCTAAGGACCTCAGAATCAGAATCAAGCTCTTCTTCTTCTTCTTCTTCTTCCAAAGAGCATGCTTTGGATTCTGAGTCTCATCAAGATAAGGCAAGACATGTTTCTAAGTGGCACACTTTTGTGCAATTGTTGAGGAGCAAGTCAAAGAAGCCTTTGGCCACATTGCATCCTCTTAGTGTCCTCAAGCTCTCAAGAAGAATGAGTGGTAGCATGAGGAAGACTTCTTCACTTGCTACCATGGATTCAGATTCTTCATTATTGCACACCTCACCATGGAAGATCTTCTCTCTCCATGACTTACAAATTGCTACCAAATATTTCAGCCAAGAGAATTTGATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATCATCAGTTAGTAGCAGTTAAACGGCTAACAAGAGGAACAGCTGATGAAACTATAGGTGACTTCTTATCAGAACTTGGAATCATGGCGCATGTAAACCACACCAACACTGCTAAGTTGGTTGGTTATGGTGTGGAAGGTGGAATGCATCTGGTTCTTCAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTGCTTTATGGGTCCAAGGAGAAGCTTCCCTGGTCTATTAGGCAGAGGATTGCATTAGGAACAGCAGAGGGAATATTGTATCTTCATGAGGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGAATATGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGCGTTACAAGATTTGAAGGAACTTTTGGATACCTTGCTCCAGAATACTTACTCCATGGCATAGTAGATGAGAAAACAGATGTATTTGCATTTGGTGTAGTGCTATTAGAATTAGTAACTGGGCGGAGAGCACTTGATTACTCACAACAAAGTCTTGTCTTATGGGCAAAACCTTTGTTGAAGAAGAATAATATTAGGGAGCTGATTGATCCTTCACTAGGAGGTGACTTTGATTATAGAGAGGTTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCGATTCGTCGTCCCTCTATGAGACAGATTGTGGAGCTTCTGAAAGGGAATCTTAGCTGCTTCAAGTTTGCAAAGAAATCTCGAGTTCCATTCTTCACAAGAGTCTTTCAACAAGATGAGTTTCTTGAATCAGATTAG 1260 0.4087 MKDLLVDSPVCVLEDLLRTSESESSSSSSSSSSKEHALDSESHQDKARHVSKWHTFVQLLRSKSKKPLATLHPLSVLKLSRRMSGSMRKTSSLATMDSDSSLLHTSPWKIFSLHDLQIATKYFSQENLIGKGGYAEVYKGCLPNHQLVAVKRLTRGTADETIGDFLSELGIMAHVNHTNTAKLVGYGVEGGMHLVLQLSEKGSLASVLYGSKEKLPWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDEYEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNNIRELIDPSLGGDFDYREVNVMLLAASLCIQQSSIRRPSMRQIVELLKGNLSCFKFAKKSRVPFFTRVFQQDEFLESD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00086 419 Pfam Protein kinase domain 124 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00086 419 SMART serkin_6 123 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00086 419 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 402 - -
Stsc60417g00086 419 MobiDBLite consensus disorder prediction 18 35 - -
Stsc60417g00086 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Stsc60417g00086 419 ProSiteProfiles Protein kinase domain profile. 123 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00086 419 Gene3D Transferase(Phosphotransferase) domain 1 200 402 - -
Stsc60417g00086 419 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 93 197 - -
Stsc60417g00086 419 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
Stsc60417g00086 419 PANTHER OS08G0249100 PROTEIN 7 402 IPR046958 -
Stsc60417g00086 419 SUPERFAMILY Protein kinase-like (PK-like) 98 388 IPR011009 -
Stsc60417g00086 419 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Stsc60417g00086 419 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00086 Stsc-Chr60417 413428 415450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00086 111 390 Receptor kinase-like Gene Family AT1G53420 43.056 1.21e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60417g00086 Pkinase 7.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00086 - - gmx:100780587 617.461