Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00063 ATGTCATACATGTTTGATCTGCAAAGCTATGGAGTAACAAATTTGAAGCAATGTTATTTGAATGCAGGCAATGACAGAGGAGAGCCAAGGGGCAATGCTGCCAGGGCTGGGGCTCCACAGAAAGTGCTACCAATTGAGATTCCATCTATACCTTTGGATGAGTTAAATAGGTTAACAGGAACCTTTGGTTCCAAGTCTTTCATAGGAGAAGGTTCCTATGGACGGGTCTACTATGCAAAATTGGAAGATGGAACTGATGCTGCAATCAAGAAGCTGGATACAAGTTCTTCAACAGAACCTGACACCGATTTCGCGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATAATTTTGTGGAGATGATTGGTTACTGTCTAGAGGCAAATAACAAAATCTTGGTTTATCAATATGCAAGTCTTGGTTCTTTGCATGACATATTACACGGAAGGAAGGGTGTACAAGGGGCTGAACCAGGTCCAGTTTTAAGCTGGAACCAAAGAGCGAAAATTGCATTCGGTGCAGCAAAAGGACTTGAGTATCTTCATGAAAAGTGTCAGCCTTCTATAGTTCACCGTGATGTTAGATCCAGCAATGTATTACTCTTCAATGACTATGAAGCTAAGATTGCAGATTTCAGCTTGACAAACCAGTCTTCTGACACCGCGGCCCGCCTACATTCAACAAGAGTGTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCAATGACTGGGCAGATAACGCAGAAGAGCGATGTTTACAGTTTCGGAGTTGTGCTTTTAGAGCTCTTAACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAGCAAAGTCTTGTAACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTATCCCCCAAAGGCCATTGCTAAGTTGGCCGCGGTTGCAGCACTTTGTGTGCAGTATGAAGCAGATTTCAGGCCAAACATGACTATTGTGGTCAAAGCTCTCCAGCCACTTCTGAATGCAACAAAACCTGGTCCTGAAGCAAACGCTTGA 1068 0.4373 MSYMFDLQSYGVTNLKQCYLNAGNDRGEPRGNAARAGAPQKVLPIEIPSIPLDELNRLTGTFGSKSFIGEGSYGRVYYAKLEDGTDAAIKKLDTSSSTEPDTDFAAQLSVVSRLKHDNFVEMIGYCLEANNKILVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKCQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNATKPGPEANA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00063 355 Gene3D Transferase(Phosphotransferase) domain 1 140 351 - -
Stsc60417g00063 355 Gene3D Phosphorylase Kinase; domain 1 31 138 - -
Stsc60417g00063 355 FunFam probable protein kinase At2g41970 35 138 - -
Stsc60417g00063 355 SMART tyrkin_6 62 340 IPR020635 GO:0004713|GO:0006468
Stsc60417g00063 355 ProSitePatterns Tyrosine protein kinases specific active-site signature. 190 202 IPR008266 GO:0004672|GO:0006468
Stsc60417g00063 355 FunFam PTI1-like tyrosine-protein kinase 3 140 350 - -
Stsc60417g00063 355 PIRSF ILK 25 349 - -
Stsc60417g00063 355 Pfam Protein tyrosine and serine/threonine kinase 67 340 IPR001245 GO:0004672|GO:0006468
Stsc60417g00063 355 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Stsc60417g00063 355 ProSiteProfiles Protein kinase domain profile. 62 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00063 355 CDD STKc_IRAK 68 343 - -
Stsc60417g00063 355 SUPERFAMILY Protein kinase-like (PK-like) 42 340 IPR011009 -
Stsc60417g00063 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 28 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00063 Stsc-Chr60417 275671 277500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00063 53 347 Trihelix Transcription Factor Family AT5G38560 43.854 2.32e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc60417g00063 PK_Tyr_Ser-Thr 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00063 - - gmx:100786291 617.076