Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00056 ATGGAGCTTGCTTTGAGCTTAGGGGAAGCACCTAAGTCCTTCACTTTGCCTAACAACAAGGATCCAGTGGCTTTCTGCGTACCACTTGGTGCTGCCTCCTCCGATGAGAGAAGAGCCTCCTCAGATCCACCAGTTCAGCTCGACCTTCTCCCTTCAACGCCGGTTCTTCGCTCCCAACACCCCTCTTCACACCTTCGAATTCCATGGCTCACCGATGCACTTGGTTTGGAGAGGATGACATCAGAGCCACCGGCGGCGAGGGCCTTGGACGTGAACTCTTTCCCGGGGGAAGACGGAGACGACGGCGCTGCCCTTTCCTCACCTAACAGCGCCGTATCGTCCTTCCAGATGGATTTCTGTCTTAGAAACGGTAACAGCGGCGATGTTGCGGCGGCGATGCCGAGGAACAGGAGAGACGTAGAAGGTGCAGAGGGAAACGATAGAGGCACAAGCGACGACGACGAGAACGGATCCACCAGGAAGAAACTCAGGCTCTCAAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACTACCCTTAATCCTAAGCAGAAACTGGCTCTTGCTAAACAGTTAAACCTTCGTCCTCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCCAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGATGCTGTGACACCTTAACGGAAGAGAATAGGAGGCTGCAGAAGGAGCTGCAAGAACTGAGGGCATTGAAGACATCTCAACCCTTCTACATGCAGCTTCCGGCCACCACTCTAACCATGTGCCCTTCTTGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAACGACGCTTCTCAAATTGCTTCCGCTTTGTCTCTCACTAACAAACCCAGAATCTTGCCGTTTCCTAATACTCACCAGGCCCATCCTCCTCCTCCGGCCCAAAAGGCCCATCAATGA 960 0.525 MELALSLGEAPKSFTLPNNKDPVAFCVPLGAASSDERRASSDPPVQLDLLPSTPVLRSQHPSSHLRIPWLTDALGLERMTSEPPAARALDVNSFPGEDGDDGAALSSPNSAVSSFQMDFCLRNGNSGDVAAAMPRNRRDVEGAEGNDRGTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLTNKPRILPFPNTHQAHPPPPAQKAHQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00056 319 Coils Coil 222 252 - -
Stsc60417g00056 319 SMART HOX_1 158 220 IPR001356 GO:0003677
Stsc60417g00056 319 ProSiteProfiles 'Homeobox' domain profile. 156 216 IPR001356 GO:0003677
Stsc60417g00056 319 CDD bZIP 209 248 - -
Stsc60417g00056 319 Pfam Homeodomain 160 214 IPR001356 GO:0003677
Stsc60417g00056 319 SMART halz 216 259 IPR003106 GO:0006355|GO:0043565
Stsc60417g00056 319 MobiDBLite consensus disorder prediction 134 163 - -
Stsc60417g00056 319 SUPERFAMILY Homeodomain-like 148 217 IPR009057 -
Stsc60417g00056 319 Pfam Homeobox associated leucine zipper 216 250 IPR003106 GO:0006355|GO:0043565
Stsc60417g00056 319 Gene3D - 164 214 - -
Stsc60417g00056 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 288 - -
Stsc60417g00056 319 CDD homeodomain 160 217 IPR001356 GO:0003677
Stsc60417g00056 319 MobiDBLite consensus disorder prediction 126 163 - -
Stsc60417g00056 319 FunFam Homeobox-leucine zipper protein 18 146 221 - -
Stsc60417g00056 319 ProSitePatterns 'Homeobox' domain signature. 191 214 IPR017970 GO:0000981|GO:0006355
Stsc60417g00056 319 MobiDBLite consensus disorder prediction 88 109 - -
Stsc60417g00056 319 Pfam HD-ZIP protein N terminus 39 115 IPR006712 GO:0005634
Stsc60417g00056 319 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00056 Stsc-Chr60417 236230 237921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00056 44 282 Homeobox Transcription Factor Family AT5G47370 54.065 1.83e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60417g00056 HD-ZIP_N 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00056 K09338 - gmx:100776113 392.119