Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00042 ATGGGAATGGATTCTGAGAACAACAATCTCTCCAGATTGCAATGCTCCTATGCCTCCTTGGATGAAGCCTTCGAAATTGGGAAGGAGACTTACAGGGGGCAGCAATACAGCCATATATACTTCGCTCGCCTTCACTTGATGCGCACTCTCTTGTATTCCCTCGTCTCCCAGTGGAAACCCCAAACCCCTGTGTGCACTGTTTTGGGATTGGAAGAGGGAAAAGAATGTGTGATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGGAGAGATCTGCGGTTCCGCTTGTTAAGCCTCATAACTTCATGCACGATGATGATTATCTAGTGTTGGAGGATGAAAGCGGGAGAGTTAAGCTTGGCGGGGACCTCATTTCGCCTTCTGTGTTCGTAACAGGAATTGTAGTTGCTTTGCATGGGAAGGAAACGGGGGCAGGCGATTTTTCGGTTTTGGAAGTCCTAGAAGCTGGCCTACCACCACAGATAGAATTCCCTCTTAAATCAAGAGAAGACAAATACATTGTCCTTGTGTCTGGATTAAATGTTGGGAGCAATAATTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGCCATTTAGGAGATGAAAAGGAGCAAAGTATTGCATCTCAAATTGTTCATGTTGTCATTGCTGGAAATTCTATTGACATACCACGTGGACTTACTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGGATAGCTGAACCAATAAAAGAACTGGATATTTTGTTGAATCAGATTGCGGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAATGACCCTGCTAATTTCTCATTACCACAGCAGCCATTGCATAGATGCCTTTTTCCTGGTTCATCTGCCTATAACACCTTTAGATCTTGTACAAATCCTCATTCTTTTGAGCTTGATAATATCAGGTTTCTTGGCACATCCGGGCAGAATGTAGACGATCTTGAGAAGTATTCTGATGCAAAAGATAAACTTGAATTCATGGAAAGGACACTAAGGTGGAGGCATATAGCACCCACAGCACCTAATACTCTTGGATGCTATCCTTATACTGATAAGGACCCCTTCTTCATTGAGAGTTGTCCTCATGTGTACTTTGTTGGCAATCAAGATAAATATGAATCTCGTGTCATAAAGGGATCTGAAGGGCAGTTTGTGAGACTCATAAGCGTCCCGAGATTCAGTGAATCTGGAGTTGCAGTTGTGGTAAATTTGAGGGATCTTGAATGTCATCCTCTCAGTTTTGGAACTCAATTCAGCTCATAA 1323 0.4263 MGMDSENNNLSRLQCSYASLDEAFEIGKETYRGQQYSHIYFARLHLMRTLLYSLVSQWKPQTPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHDDDYLVLEDESGRVKLGGDLISPSVFVTGIVVALHGKETGAGDFSVLEVLEAGLPPQIEFPLKSREDKYIVLVSGLNVGSNNSNPLQFQLLIDHITGHLGDEKEQSIASQIVHVVIAGNSIDIPRGLTNGQNLASKDLSRIAEPIKELDILLNQIAAGLPLDIMPGPNDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHSFELDNIRFLGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHIAPTAPNTLGCYPYTDKDPFFIESCPHVYFVGNQDKYESRVIKGSEGQFVRLISVPRFSESGVAVVVNLRDLECHPLSFGTQFSS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00042 440 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 434 IPR024826 -
Stsc60417g00042 440 CDD MPP_PolD2_C 182 434 IPR041863 -
Stsc60417g00042 440 FunFam DNA polymerase delta small subunit 167 440 - -
Stsc60417g00042 440 FunFam DNA polymerase delta subunit 2 41 165 - -
Stsc60417g00042 440 Pfam DNA polymerase delta subunit OB-fold domain 35 162 IPR040663 -
Stsc60417g00042 440 Gene3D - 174 439 - -
Stsc60417g00042 440 Gene3D - 41 165 - -
Stsc60417g00042 440 Pfam DNA polymerase alpha/epsilon subunit B 183 391 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00042 Stsc-Chr60417 180710 185116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00042 1 439 Core DNA Replication Machinery Family AT2G42120 75.399 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00042 K02328 - gmx:100780072 768.074