Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00038 ATGGATATCCGTAAGAGAGGAAGGCCTGACGGATTCGTTAACGGAGGATTCAAGAAAAACAAGCAAGAATTGGACTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTACCTGGTGGCTATAATGCTGTTGCCCAAATGATGAATCTGACACCTGCTATGCCTCAAGCATCTAGAAACGTTGCAGCCCCACCACCACCTGTCCCTAATGGATCTGCACAGTCTTCTGTTAAAACTCGTGTATGCAACAGGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAGCCCGTTGCTCATTTTGATGATCATCGTGCCATGGGCCCACCCGCAGTAGGTCGCATGCCTGGTCCTGGTCGAATGGAGCCTCCCCCTGGTCCTGCCACTAGCTTTGGTGCCAATGCTACTGCCAAGATCAGTGTAGAAGCTTCGCTTGCTGGAGCTATTATCGGGAAGGGTGGTGTCAACTCGAAGCAGATATGTCGCCAAACAGGAGCCAAACTTTCTATTCGAGAGCACGAATCGGATCCAAATCTCAGAAACATAGAACTGGAGGGAAGTTTCGAACAAATAAAGGAGGCAAGCAATATGGTAAAGGAATTACTTTTGACGTTGCAGATGTCAGCTCCCCCTAAATCGAACCAAGGTGCCCCGGGTTCTGGTGGTCCTGGAAGCAACTACAAAACCAAGCTGTGTGAGAATTTTTCAAAAGGATCTTGCACTTTTGGAGATAGATGTCACTTTGCACACGGTGCTGCCGAGTTGCGTAAAAGTGTATGA 882 0.4819 MDIRKRGRPDGFVNGGFKKNKQELDSLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLTPAMPQASRNVAAPPPPVPNGSAQSSVKTRVCNRFNSAEGCKFGDKCHFAHGEWELGKPVAHFDDHRAMGPPAVGRMPGPGRMEPPPGPATSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKSNQGAPGSGGPGSNYKTKLCENFSKGSCTFGDRCHFAHGAAELRKSV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00038 293 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Stsc60417g00038 293 FunFam Zinc finger CCCH domain-containing protein 256 291 - -
Stsc60417g00038 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Stsc60417g00038 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 147 IPR045877 GO:0003729
Stsc60417g00038 293 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Stsc60417g00038 293 SMART kh_6 167 237 IPR004087 GO:0003676
Stsc60417g00038 293 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Stsc60417g00038 293 Gene3D - 261 292 - -
Stsc60417g00038 293 Gene3D - 93 130 - -
Stsc60417g00038 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Stsc60417g00038 293 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Stsc60417g00038 293 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Stsc60417g00038 293 Pfam KH domain 171 234 IPR004088 GO:0003723
Stsc60417g00038 293 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Stsc60417g00038 293 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Stsc60417g00038 293 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Stsc60417g00038 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Stsc60417g00038 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Stsc60417g00038 293 Gene3D K Homology domain, type 1 164 260 IPR036612 GO:0003723
Stsc60417g00038 293 CDD KH-I_AtC3H36_like 171 236 - -
Stsc60417g00038 293 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Stsc60417g00038 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Stsc60417g00038 293 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00038 Stsc-Chr60417 159908 163135 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60417g00038 KH_1 3.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00038 - - gmx:100803981 498.049