Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00032 ATGAATCACAACGAGATTCATTGCAGAAGAATGATTCAGCAAAACCATGGAGGACTAAATGCTGATGATTTTGGTTACTTTGATACCAGACACTCCTGGAACATGCCTGCAGAAGGATCACAGCCACCACCGCCACCACAAATAGGCCCTGCTGCCACCATCTTGACTCGGTTCGAGTCGCCGGCTCCTGCCTTCTATGCAGCAGAATTCTGCATGGGGTTTGCAGAATATGAAGACTCTCAAACTCATCAGTTCTCTAAGATGAATAATAATAATAGTGATTTGGAATTCCCTTTGTATCAGAGGGACAAGTTTGATCTCTCAAACACTTTGCAAGCAATGGTGAATTCTCAAAGATCATCCAACAAAATCCCATGTGCCAATTTTTCTTCAATCAAGTTCCATCACCACCACCAACAAAAGTTCTTCACTGATGCCATGACTACTTCACCATTTCCCAACAAAGGAAATCAAGATCATATAGTGAGCTTCACTTCATATCAAGATAGGTCTCCAACACCTTGTTCAGGAGGAAGTAGTGTATCAGGAAACTCTTCTTCTAGTGGGGTAACTGTATCGAGTAAAACGCGCATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAATGTGTGAATCGCCTTGGTGGTGCTGATAAGGCCACACCAAAGAATGTATTGAAGATGATGGACTCAGATGGATTAACCATCTTTCATGTCAAAAGCCATTTGCAGAAATATAGAATTGCAAAGTACATGCCTCAGCCAACTCATCAAAATGGGAAATCTGAGAAAAGAATCCGCATAGAGGATGTTCAACATCAACATCAGCATATTGATATGAAAAATGGAATTCAAATTAGAGAAGCACTTCAACAGCAATTAGATGCTCAAAAGCTTCTTCATGAACAGCTAGAGAATCAGAGAAAGTTGCAGCTGCGAATCGAGGAACAAGGTAGGCAGTTGAAGGAAATGTTTGATCAGCAGCAAAAGGCAACTAATGAGCTTTTCAATTCTCATCCCAGCATAACCAAAGATGATACATAA 1047 0.4088 MNHNEIHCRRMIQQNHGGLNADDFGYFDTRHSWNMPAEGSQPPPPPQIGPAATILTRFESPAPAFYAAEFCMGFAEYEDSQTHQFSKMNNNNSDLEFPLYQRDKFDLSNTLQAMVNSQRSSNKIPCANFSSIKFHHHHQQKFFTDAMTTSPFPNKGNQDHIVSFTSYQDRSPTPCSGGSSVSGNSSSSGVTVSSKTRIRWTQDLHEKFVECVNRLGGADKATPKNVLKMMDSDGLTIFHVKSHLQKYRIAKYMPQPTHQNGKSEKRIRIEDVQHQHQHIDMKNGIQIREALQQQLDAQKLLHEQLENQRKLQLRIEEQGRQLKEMFDQQQKATNELFNSHPSITKDDT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00032 348 Pfam Myb-like DNA-binding domain 199 248 IPR001005 -
Stsc60417g00032 348 Coils Coil 288 308 - -
Stsc60417g00032 348 MobiDBLite consensus disorder prediction 167 191 - -
Stsc60417g00032 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 180 334 IPR044848 GO:0003700
Stsc60417g00032 348 Coils Coil 315 335 - -
Stsc60417g00032 348 SUPERFAMILY Homeodomain-like 193 249 IPR009057 -
Stsc60417g00032 348 FunFam Myb family transcription factor 194 252 - -
Stsc60417g00032 348 Pfam MYB-CC type transfactor, LHEQLE motif 285 332 IPR025756 -
Stsc60417g00032 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 250 IPR006447 GO:0003677
Stsc60417g00032 348 Gene3D - 194 253 - -
Stsc60417g00032 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 252 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00032 Stsc-Chr60417 135444 137295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00032 174 329 G2-like Transcription Factor Family AT4G28610 52.564 4.42e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60417g00032 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00032 - - gmx:100527257 328.561