Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00030 ATGTCCCATTTCCGGAAACTTCAATTCACGAATTTCATTTCCAAAATTTCCCACACTTGCCTTAAACCCTCGCAAAACCCTAGATTCCATAGTACCAAATCTGCAACCCAATCCAAACCAAAAAATCATGATTTCAAGTTTCCCTCCAAGGTAAGGAAGGAAGCACAAGCCGCATTGCTCGAGTACCTTCATTCCACTAGGAGCTTGCAGTTCGTTGACGCAGACAATATGTGCAAAAACTCGCCTTTTTTCCTCGAAGATATTCTTAGGAAGGTTCTTCAGACGAAGAAGATCGACCCAGGTGCCAATGGTGTCAAGAAATCAATCTCGCGTTACCTCCGTTACCACCCAATTAACGAGTTCGAACCATTCTTTGAGAGTACGGGTTTGAAGCCTTCTGAATACTTGCACCTTCTTCCAAGGGACTTGATGTTCCTCCATGATGACACTCTCTTGATGGAGAATTACCATACTTTGTGTAACTATGGTGTTCCCAGGAACAAAATGGGGAAGATCTTCAAGGATACACCTCAAGTTTTTAGATATGAAAGTGGGGTTCTGGGGTCCAAGTTTCAGAGTTATGAAGAGCTTGGTGTTGCTCCATCAACTTTGGTAAAGGTGATTTCTTTGAGCCCTATGGTTTTGGTTGGGGATGTTGACTTTTATCTAGTGAAGGTTTTGGAGAAGCTGAACCGTCTTGTTGGTGGAGAAATGGGTTGTACTTGGATTGAGGAGCAGTTGTTGGATGAGAGTAATTGTAATTTTGGGGTTATGCATGAGCTCCTGTGCTTGCTTGAGAAGGTTTACAGTGATGAAAAGTTGTTGGGTGAGATGATTGGTAAGCACCCTTCTATTGTTTTTGAGGATTCTGGAGTTCAGGCATTGTCCCTCATTGTGTTCTTGGTGAAATTAGGGTTGTCCTTAGACCAGATAGCTATCATTTTTGTGGAGTTTCCGCAAATTGGGATGTTTATGTTTCTGTCGAATTTGCGAAAGTGTTATACCTTGCTGTGTGATATTGATATGCCTGCTGTGGAGATTGGGAAGATTTTCCAGTCTCATTCTTTGCTGATGGGTTCATTTACTATCAAGAAATGTAGTAGTTTGCTCGGTAGCTTGAATGTTGGCAAGAAAATGGTCTGTAAGTTTGTGCAGGATAATCCAGAAGGGATGAAGAATTGGGCTGTGGGGAAGAAAATTGAGCCTTATCCAGATGAAAAGAAAACAAAGGCTGAGAAAATAGAGTTGTTAAAAACAGAGTTCTTGTTGAGCCTTGGATATGAAGAGAACTCGGAGGGAATAAAACAGGCTTTTAAGCTGTTTAGAGGTAAGGGAGATGAGCTTCAGGAGAGATTCAATTTTCTTGTTGATGCTGGCTTGGATGTTAAGGATGTTCGCGAAATGATTAAGGCTTCACCTCAGATTCTTAATCAGACTACAGATATGATCAACATGAAGATTGAGTACCTTTTGAGTGAAGGATATCCTTTATCAAGTTTAGTCAATTTCCCATCTTTTCTTTCCTATACACCTTGTAGAGTTAAGCTTAGGTTTTCAATGTATAATTGGCTCAGAGACCATAAAGTTGTTCACCCCATGCTTGCTTTGAGCACCATAGTTGCATGCTCGGAAGAAATATTCTTACGGTTGTATGTAAATCGACATCCATCTGGCCTTCAAGTTTGGCAGGATTTGAAATCAGAAATTTATTCTGAGAGATAA 1722 0.4077 MSHFRKLQFTNFISKISHTCLKPSQNPRFHSTKSATQSKPKNHDFKFPSKVRKEAQAALLEYLHSTRSLQFVDADNMCKNSPFFLEDILRKVLQTKKIDPGANGVKKSISRYLRYHPINEFEPFFESTGLKPSEYLHLLPRDLMFLHDDTLLMENYHTLCNYGVPRNKMGKIFKDTPQVFRYESGVLGSKFQSYEELGVAPSTLVKVISLSPMVLVGDVDFYLVKVLEKLNRLVGGEMGCTWIEEQLLDESNCNFGVMHELLCLLEKVYSDEKLLGEMIGKHPSIVFEDSGVQALSLIVFLVKLGLSLDQIAIIFVEFPQIGMFMFLSNLRKCYTLLCDIDMPAVEIGKIFQSHSLLMGSFTIKKCSSLLGSLNVGKKMVCKFVQDNPEGMKNWAVGKKIEPYPDEKKTKAEKIELLKTEFLLSLGYEENSEGIKQAFKLFRGKGDELQERFNFLVDAGLDVKDVREMIKASPQILNQTTDMINMKIEYLLSEGYPLSSLVNFPSFLSYTPCRVKLRFSMYNWLRDHKVVHPMLALSTIVACSEEIFLRLYVNRHPSGLQVWQDLKSEIYSER 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00030 573 Pfam mTERF 407 547 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 Pfam mTERF 264 426 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 MobiDBLite consensus disorder prediction 23 45 - -
Stsc60417g00030 573 Gene3D Transcription termination factor 3, mitochondrial 293 565 IPR038538 -
Stsc60417g00030 573 Gene3D Transcription termination factor 3, mitochondrial 104 292 IPR038538 -
Stsc60417g00030 573 PANTHER CGI-12 PROTEIN-RELATED 275 555 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 SMART mt_12 170 200 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 SMART mt_12 431 461 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Stsc60417g00030 573 SMART mt_12 466 496 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00030 Stsc-Chr60417 127808 129795 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc60417g00030 mTERF 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00030 - - lja:Lj1g3v4317450.1 648.662