Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00028 ATGTCTCCCAGAGGAACTCCCACTCATAACCACAACAACCAACCACCTTCCTCCACTCTTGACTCCTTAAATGGCTTGAAATTCGGCAAAAAAATTTATTTTGAGGATTTGGGTCTCTCCACACCCTCAAACACTTCTTCTTCATCATCTTCTGTTGCTGTTCCCAAGAAGGGTAGGGGCGGTTCTGTTCAGCATGCTCACCCACCGAGGTGCCAGGTTGAGGGTTGCAAAGCAGATCTGAGTGATGCTAAGGCTTATTATTCAAGGCACAAAGTTTGTGCCATGCACTCCAAATCCCCCACTGTCACTGTTTCTGGTCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAGCTTCCTGAATTTGATCAAGGGAAAAGAAGTTGCCGCAGGCGACTTGCTGGCCATAATGAACGGCGGAGAAAGCCCCCACCATCTAGCAATCTCTTGACCTCTCGTTATGCAAGACTTTCTTCCTCATCACTTTATGATAATAGTGGCAAAGGTGGCAGCTTCCTGATGGAATTCGCTTCATACCCGAGGCTGGGGGGTCTGAGAAACACAATTCCAAATCCCAGATCATCTGAAGTAATCTCTGGAAATCAAACTTCAACACTTAACTGGCAGGGCTATTCAGAGATATCATCTGATCTTTTCTTGCAAGGCTCAGTGGGTGGTGGCACAAGCTACCCCAATAATCTCAGACACCCTCCTCCTCATTCGAGCGAAAGTTATGCTGGCGTAGCGGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAACCATGGGGTTCTAGTAACATGGCACCAACTCTCGGGTTGAATAACATGTTGAATTTCAGTGCCACACAAATTGCTGCTTCATCCCATGGTGAATCCATCCATCATGTTCCGAGTGCCTCGTGGTGTTTCAAGGACATCGATCCCGGTAACTGTTCAACCAAGGTTGTCCCTGATCTAGGCCTCGGTCAATTCTTGCAGCTTCCAAATAGCCAAGTTCCGGGTGAGTTTGATGCCCTGCAACAGGGTAGGAGGCATCATGTGGATCTTGAGTAG 1062 0.4793 MSPRGTPTHNHNNQPPSSTLDSLNGLKFGKKIYFEDLGLSTPSNTSSSSSSVAVPKKGRGGSVQHAHPPRCQVEGCKADLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNLLTSRYARLSSSSLYDNSGKGGSFLMEFASYPRLGGLRNTIPNPRSSEVISGNQTSTLNWQGYSEISSDLFLQGSVGGGTSYPNNLRHPPPHSSESYAGVADSSCALSLLSSQPWGSSNMAPTLGLNNMLNFSATQIAASSHGESIHHVPSASWCFKDIDPGNCSTKVVPDLGLGQFLQLPNSQVPGEFDALQQGRRHHVDLE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00028 353 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Stsc60417g00028 353 MobiDBLite consensus disorder prediction 39 55 - -
Stsc60417g00028 353 MobiDBLite consensus disorder prediction 39 69 - -
Stsc60417g00028 353 Pfam SBP domain 71 144 IPR004333 GO:0003677
Stsc60417g00028 353 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
Stsc60417g00028 353 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Stsc60417g00028 353 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 293 IPR044817 GO:0003677
Stsc60417g00028 353 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
Stsc60417g00028 353 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00028 Stsc-Chr60417 118622 121379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00028 26 353 SBP-box Gene Family AT2G42200 43.059 9.15e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60417g00028 SBP 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00028 - - ahf:112696101 520.776