Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00027 ATGGCTTTAGAAGAGAGCCCGCGAATCCCACTTTTTCATGCTGCATCCCTTATGGGCCCAATGGGATTGCCTCGTCTGCACCAGAGCAATATAGACGAAGCTTCAAGAAGAAGTTTTTCCAGAAGAAGCAAATCCACCGGAAGGACACAAGTTTACACCGTATCTGAGCTTCAGTTTGCTACTAACGGCTTCAATGAATGCAACATTCTGGGAGAGGGTTCTCTTGGCACTGTATACAGAGCCAAATTTCCTGGTGGCAAAATTCTGGCCGTGAAGAACATAAACTTGGCGGGTGTGTCTTACAGAGAAGAGGAAAAGTTCTTGGATGTTATCTGCACGGCTTCCCGATTGAAGCATCCGAACATAGTGGCACTGAATGGCTACTGTTTGGAGCGGGGAAAGCATCTTCTTGTGTATGATTATGTTAGAAATTTGACTCTGCACGATGCTCTTCACATAGACGTATACCAGCCTCTATCATGGATCCTCCGTCTCCGGATAGCTCTCGGCGTTGCTCGTGCTCTTGACTATTTGCACTCAGCATTTTCCCCACCTGTGGCCCATGGAAACTTGAAGGCAGCCAACGTTTTACTGGACGAGAATTTGATGCCCCGTCTTTCTGACTGTGGCTTGGCTGTTTTGAGACCACTGAGGAGCAACCAGGCTATCAAGTCTCCTGCTGCAGATTTAGGATACCTTTCACCTGACCATGGGAGAGTAGGAGGTAGCAGCAGAAAGAAAGATGTGTTTGCCTTTGGGGTACTGCTTCTGGAAATGTTAACGGGAAGGAAAGCATTCGATGGTGCCAGGCCAACTGATGAGCAGTACCTAGTGAAATGGGCTTCACCAAGGCTTCACGATAACAGCAGTTTGGAGCAGATGGTGGATCCGTGTATGAAGAGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGCTATCGTCTCCCTCTGTATCCAGCCTTCAAGGCATTTCCGTCCTCAAATGTCAGAAGTTGTGGACTCGCTTGTATCATTCTCACAAAAGTTCAACAGACCAAAGGGCGGTGTTGCAGATGGTGGCAACAATATGGAACTTGATTCGTTTGAGATATCTTTCCGTTCATCAAACACACGTTTCTTGGCTTCACCCGCATTCAGCCATTTATCCGCCTAA 1155 0.4736 MALEESPRIPLFHAASLMGPMGLPRLHQSNIDEASRRSFSRRSKSTGRTQVYTVSELQFATNGFNECNILGEGSLGTVYRAKFPGGKILAVKNINLAGVSYREEEKFLDVICTASRLKHPNIVALNGYCLERGKHLLVYDYVRNLTLHDALHIDVYQPLSWILRLRIALGVARALDYLHSAFSPPVAHGNLKAANVLLDENLMPRLSDCGLAVLRPLRSNQAIKSPAADLGYLSPDHGRVGGSSRKKDVFAFGVLLLEMLTGRKAFDGARPTDEQYLVKWASPRLHDNSSLEQMVDPCMKRTFSSKALSRYAAIVSLCIQPSRHFRPQMSEVVDSLVSFSQKFNRPKGGVADGGNNMELDSFEISFRSSNTRFLASPAFSHLSA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00027 384 ProSiteProfiles Protein kinase domain profile. 64 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00027 384 Gene3D Phosphorylase Kinase; domain 1 27 141 - -
Stsc60417g00027 384 SUPERFAMILY Protein kinase-like (PK-like) 39 336 IPR011009 -
Stsc60417g00027 384 FunFam Leucine-rich repeat receptor-like protein kinase 142 347 - -
Stsc60417g00027 384 PANTHER OS01G0253100 PROTEIN 40 340 - -
Stsc60417g00027 384 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 29 141 - -
Stsc60417g00027 384 Gene3D Transferase(Phosphotransferase) domain 1 143 351 - -
Stsc60417g00027 384 Pfam Protein kinase domain 65 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00027 Stsc-Chr60417 113670 115599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00027 1 384 Strubbelig Receptor Gene Family AT5G06820 52.020 3.45e-127 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc60417g00027 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00027 - - gmx:100775254 505.753