Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00023 ATGAGTCTCCAAAGCAATTTCTTGTCCATTTTGGTTCTCTTGGCTGCAGTTTTTGCATCTTTGCATCTCATAAATCCAAATGAAGAGTTACTCAACATTTTCAAAGTCTTCACCATAACACCCTTCTCATCATCATCATTATATTCATATGCATATTTGCCACTACCTTATATATGCATCTTGTTCAGAGGACATCATCATCATCATCACAAGAAACACCACCCTGATGAAGATAGTGGAAATGCAGGTTCCATTTGTGATGATTTTCCACCAGGGATTCCACCTCCAAGCACCAACACCACCTCTTATCTTTGTGTTGATCAAAAAGGTTGCTGCAATTTCACAACAGTTCAAGCAGCAGTTAATGCAGTTCCAGACTTGAGCCAAAAGAGAACCATAATATGGATTAACAACGGCATATACTATGAGAAAGTAATGGTCCCAAGAACAAAAACCAACATTACATTCCAAGGACAAGGTTACACTTCAACCGCAATTGCATGGAATGATACAGCAAAGTCAGCAAATGGCACATTCTATAGTGGTTCCGTACAAGTTTTTGCATCCAACTTCATTGCCAAGAACATAAGCTTCATGAACTTGGCACCAATGCCAAGTCCTGGAGTTGAAGGAGCACAAGCAGTGGCAATCAGAATATCAGGAGATCAAGCTGAATTCAAGGGTTGTGGATTCTTTGGAGCACAAGACACCCTCCATGATGATAAGGGCCGCCATTACTTCAAGGATTGCTATATCCAGGGCTCAATTGATTTCATATTCGGCGATGGAAGGTCTCTTTACGAGAATTGTCAGATTGTTTCTATAGCGAATCCAGTTCCACAAGGATACAGGAGCATAAATGGTGCAGTGACAGCTCATGGAAGAGTATCCATGGATGATAACACAGGATTTGTGTTTGTGAACTGCACGGTTGGAGGGAGTGGGAGAATATGGCTAGGAAGGGCATGGAGACCATATTCACGTGTTGTTTTTGTGTCAACAACAATGTCAGATATCATTGCCCCTGAAGGTTGGAACGATTTCAATGACCCTGCAAGGGATCAGTGA 1068 0.4167 MSLQSNFLSILVLLAAVFASLHLINPNEELLNIFKVFTITPFSSSSLYSYAYLPLPYICILFRGHHHHHHKKHHPDEDSGNAGSICDDFPPGIPPPSTNTTSYLCVDQKGCCNFTTVQAAVNAVPDLSQKRTIIWINNGIYYEKVMVPRTKTNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGVEGAQAVAIRISGDQAEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGDGRSLYENCQIVSIANPVPQGYRSINGAVTAHGRVSMDDNTGFVFVNCTVGGSGRIWLGRAWRPYSRVVFVSTTMSDIIAPEGWNDFNDPARDQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00023 355 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Stsc60417g00023 355 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 85 354 - -
Stsc60417g00023 355 SUPERFAMILY Pectin lyase-like 102 351 IPR011050 -
Stsc60417g00023 355 Pfam Pectinesterase 105 350 IPR000070 GO:0030599|GO:0042545
Stsc60417g00023 355 Gene3D - 97 355 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00023 Stsc-Chr60417 98326 99678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00023 78 354 Carbohydrate Esterase AT1G05310 71.841 3.53e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00023 - - ahf:112696095 675.241