Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00021 ATGGGTTCGAGTGTTAAGAGAAGCAACCAAGTTGAAGCACCACTTCAACAACAACATCATCATCAAATACAAGACAACGAAATCTCTTTCGGGATGATGCAATCTCCGTCATCATCATCCTCTATCATCCCGGGAAACTGCAACTTCTTAAACAAGGATTCAGGTGGTGGAGCTTATGATTTGGGGGAACTGGACCAAGCCCTTTTTCTCTACCTAGATGGACAAGGACAACCCGATCCCTCAAATACTCTTCATCACCAAGACCAAAGACAGAAGTCATCATCATCAACGGGAGCAGCGAGGCCTCATACTCTCAACATATTTCCGTCTGAGCCTATGCATGTTCATCCATCATCATCCAATTCCAAGCTCACTATGGACTTGGTTTCTCTACAACCCAGTGCTTCCAAGCGACCCACCATAGAGTTGCCCAAACCAATAACCAACGAACCTGCTTCTGCAGCCCCCACTCCGAACCCACCTAAACCAGCTGCCAAGCAGCGAGACAGTAGTAACCGCAAGGGTCCAACCTCAAGTTCTGAACACGAAGGGCCCAAAACACCAGATCCCAAGACTCTTAGAAGGCTTGCTCAGAATAGAGAGGCAGCTCGGAAAAGCAGGCTTAGAAAAAAGGCATATGTTCAGCAGCTAGAGTCGAGTAGGATTAGGCTTAATCAGATTGAGCAAGAGCTACAGCGTGCTAGATCTCAAGGCATATTCTTGGGTGGAAGTGCAGTTATGGGTGGAGAACAAGGTGTTCCAGTGGGTATTAATGGCATAACCACAGAGGCAGCAATGTTTGACGTAGAATATGCAAGATGGCTAGAGGAGCACCACCGACTAGTGTGCGAGCTGAGGGCGGCGGTGCAAGAACACCTACCTGACAACGAGCTCAGACTCTTTGTGGAGAATTTCTTGGCGCATTACGACCAAGTTATGAACCTCAAGGGTTTAGTCGCCAGAACCGACGTCTTCCACCTTGTTTCCGGCATGTGGAAGACCCCCGCGGAGCGCTGCTTCATGTGGATCGGTGGATTCAGGCCCTCAGAACTCATCAAGATAATTGTGAGCCAAATAGAGCCTCTCACTGAGCAACAAATAGTTGGGATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAGGCTCTGTCCCAAGGCCTTGAGGCTCTTAATCAATCTCTTTTGAACACTATCACATCAGACTCCTTGAGCTCTCCTCCTGTTATGGCTAACTACATGGGACAGATGGCTCTCGCCATGAACAAGCTCGCTACTCTTGAAGGTTTCGTCAAACAGATGAATAGTAGTGTGGTCCTCACTGAAACAATCCTAGTGGATGTGGATCCAAAGACATATCCCTACCCTAGAGAAGCCCCATATCGGTGTGATGTCATGGTCGTAACCGTTTGA 1413 0.4812 MGSSVKRSNQVEAPLQQQHHHQIQDNEISFGMMQSPSSSSSIIPGNCNFLNKDSGGGAYDLGELDQALFLYLDGQGQPDPSNTLHHQDQRQKSSSSTGAARPHTLNIFPSEPMHVHPSSSNSKLTMDLVSLQPSASKRPTIELPKPITNEPASAAPTPNPPKPAAKQRDSSNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQIEQELQRARSQGIFLGGSAVMGGEQGVPVGINGITTEAAMFDVEYARWLEEHHRLVCELRAAVQEHLPDNELRLFVENFLAHYDQVMNLKGLVARTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQIVGICGLQQSTQEAEEALSQGLEALNQSLLNTITSDSLSSPPVMANYMGQMALAMNKLATLEGFVKQMNSSVVLTETILVDVDPKTYPYPREAPYRCDVMVVTV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00021 470 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60417g00021 470 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Stsc60417g00021 470 Coils Coil 210 237 - -
Stsc60417g00021 470 SMART brlzneu 187 273 IPR004827 GO:0003700|GO:0006355
Stsc60417g00021 470 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 233 IPR004827 GO:0003700|GO:0006355
Stsc60417g00021 470 Pfam Seed dormancy control 282 357 IPR025422 GO:0006351|GO:0043565
Stsc60417g00021 470 PANTHER TRANSCRIPTION FACTOR TGA9 96 435 - -
Stsc60417g00021 470 Gene3D - 190 241 - -
Stsc60417g00021 470 FunFam BZIP family transcription factor 190 239 - -
Stsc60417g00021 470 Pfam bZIP transcription factor 191 219 IPR004827 GO:0003700|GO:0006355
Stsc60417g00021 470 MobiDBLite consensus disorder prediction 76 103 - -
Stsc60417g00021 470 SUPERFAMILY Leucine zipper domain 192 234 IPR046347 GO:0003700|GO:0006355
Stsc60417g00021 470 MobiDBLite consensus disorder prediction 175 194 - -
Stsc60417g00021 470 CDD bZIP_HBP1b-like 191 243 - -
Stsc60417g00021 470 ProSiteProfiles DOG1 domain profile. 264 470 IPR025422 GO:0006351|GO:0043565
Stsc60417g00021 470 MobiDBLite consensus disorder prediction 134 194 - -
Stsc60417g00021 470 MobiDBLite consensus disorder prediction 73 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00021 Stsc-Chr60417 80528 84415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00021 48 436 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 59.753 1.56e-160 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc60417g00021 DOG1 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00021 K14431 - gmx:100815176 600.897